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List of results
- SNIC Science Cloud + (SNIC Science Cloud is a cloud computing infrastructure run by SNIC.)
- SNIC coordinated training + (SNIC coordinated training)
- Schrödinger Molecular Modelling Workshop at HPC2N (29 March 2017) + (Schrödinger Molecular Modelling / Drug Discovery Workshop)
- Scientific Visualisation (Uppsala, Nov 2018) + (Scientific Visualisation Workshop)
- Scientific Visualisation Workshop(UPPMAX, November 2014) + (Scientific Visualisation Workshop 2014)
- Scientific Visualisation Workshop(UPPMAX, January 2016) + (Scientific Visualisation Workshop 2014)
- Scientific Visualisation Workshop(UPPMAX, November 2016) + (Scientific Visualisation Workshop Autumn 2016)
- C3SE Software Development Seminar April 14 2015 + (Seminar for all users at C3SE, covering software debugging on C3SE systems.)
- C3SE Debugging Seminar April 29 2015 + (Seminar for all users at C3SE, covering software debugging on C3SE systems.)
- C3SE Scheduling Seminar April 1 2015 + (Seminar for all users at C3SE, covering the queuing system used at our systems.)
- C3SE Linux for Beginners Seminar February 24 2015 + (Seminar for all users at C3SE, covering fundamental Linux skills)
- C3SE Environment Seminar March 12 2015 + (Seminar for all users at C3SE, describing the C3SE hardware and software environment.)
- C3SE Introductory Seminar September 19 2018 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar May 8 2019 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar April 13 2016 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar September 20 2017 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar May 16 2018 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar March 26 2019 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar March 25 2015 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar May 17 2017 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar March 21 2018 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar January 30 2019 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar May 20 2015 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar November 25 2019 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar April 19 2017 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar February 20 2018 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar November 20 2018 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar February 10 2015 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar October 23 2019 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar February 14 2017 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar November 21 2017 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar October 17 2018 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar September 20 2019 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar May 18 2016 + (Seminar for new users at C3SE, describing how to use our systems)
- C3SE Introductory Seminar October 18 2017 + (Seminar for new users at C3SE, describing how to use our systems)
- VASP best practices (LiU February 2015) + (Seminar on running VASP efficiently at Triolith and Beskow (the new Cray XC-40 at PDC))
- VASP best practices (NSC-UPPMAX January 2015) + (Seminar on running VASP efficiently at Triolith and Beskow (the new Cray XC-40 at PDC))
- Optimization of a lagrangian cloud parcel model for use in the global climate model ECHAM6.1-HAM2.2 + (Serial optimization of a cloud parcel model for embedding in a the ECHAM-HAM global climate model.)
- Bolin Centre software management through local modules - trial evaluation. + (Set up and evaluate a local module system on Triolith for Bolin Centre software installations.)
- Shared memory programming with OpenMP (NSC May 2013) + (Shared memory parallel programming using OpenMP)
- Software Carpentry Workshop Lund (March 2018) + (Software Carpentry Workshop)
- Software Carpentry Workshop in R, Umeå (October 2018) + (Software Carpentry Workshop in R)
- Software Carpentry Stockholm (March 2018) + (Software Carpentry workshop)
- Software Carpentry Stockholm (June 2019) + (Software Carpentry workshop)
- Running parallel jobs in Matlab (Lunarc Sept 2015) + (Solving large problems efficiently through parallel computing in Matlab)
- An introduction to solving partial differential equations in Python with FEniCS (Lunarc June 2015) + (Solving partial differential equations in Python with FEniCS)
- MATLAB using SNIC clusters (C3SE June 2014) + (Speeding up MATLAB Computations using SNIC Clusters)
- MATLAB using SNIC clusters (Lunarc May 2014) + (Speeding up MATLAB Computations using SNIC Clusters)
- MATLAB using SNIC clusters (UPPMAX September 2014) + (Speeding up MATLAB Computations using SNIC Clusters)
- MATLAB using SNIC clusters (HPC2N September 2014) + (Speeding up MATLAB Computations using SNIC Clusters)
- Using the DDT debugger (Lunarc, October 2015) + (Speeding up code modernisation and bug resolution with Allinea DDT)
- GATK + (Structured software library for writing analysis tools for next-generation sequencing data.)
- Synthetic Benchmark on Curie + (Synthetic Benchmark for PRACE Tier-0 Curie System)
- Task-based parallelism in scientific computing (HPC2N/PRACE, May 2021) + (Task-based parallelism in scientific computing)
- Task-based parallelism in scientific computing (March 2020) + (Task-based parallelism in scientific computing)
- CodeRefinery Workshop on Sustainable Scientific Software Development (November 2017) + (Teaching researchers in sustainable software development)
- CodeRefinery Workshop on Sustainable Scientific Software Development (February 2017) + (Teaching researchers in sustainable software development)
- Tensorflow and Deep Learning, HPC2N, 8-9 May 2019 + (Tensorflow and Deep Learning)
- Test suite for VASP + (Test suite for VASP)
- The Effective Use of the Kebnekaise Accelerators (HPC2N, December 2017) + (The Effective Use of the Kebnekaise Accelerators)
- Pencil + (The Pencil Code is a high-order finite-difference code for compressible hydrodynamic flows with magnetic fields)
- The future of HPC programming - a Modern Fortran workshop, Umeå, 2022-11-(24-25) + (The future of HPC programming - a Modern Fortran workshop)
- Parallel Programming Education + (Training in parallel programming)
- Transfering data (Lund, Nov 2017) + (Transfering data to and from an HPC system)
- Transfering data (Lund, February 2019) + (Transfering data to and from an HPC system)
- Transfering data (Lund, Oct 2018) + (Transfering data to and from an HPC system)
- UPPMAX Introductory Course, August 16-19, 2022 + (UPPMAX Introductory Course)
- UPPMAX storage + (UPPMAX Swestore storage node of 200Tb)
- MDR model library update + (Updating the automated classification system for MDR proteins based on new data.)
- UppASD Autumn School (October 2022) + (UppASD Autumn School)
- XC-40 Architecture (PDC February 2015) + (Using Cray XC-40 Machines)
- Using Matlab in an HPC environment (Lunarc, November 2018) + (Using Matlab in an HPC environment)
- Using Matlab in an HPC environment (Lunarc, April 2018) + (Using Matlab in an HPC environment)
- Using Matlab in an HPC environment (Lunarc, October 2017) + (Using Matlab in an HPC environment)
- Using Matlab in an HPC environment (Lunarc, 2017) + (Using Matlab in an HPC environment)
- Using Python in an HPC environment, May 2023, UPPMAX/HPC2N + (Using Python in an HPC environment)
- Using Python in an HPC environment, September 2022, UPPMAX/HPC2N + (Using Python in an HPC environment)
- Using R in an HPC environment, HPC2N, 2021-02-(25-26) + (Using R in an HPC environment)
- Commercial engineering software (Lund, Nov 2017) + (Using commercial engineering software in an HPC environment)
- Intel Compiler (Lunarc November 2016) + (Using the Intel® compiler and performance tools)
- Utilising a modern HPC environment (Lunarc, May 2016) + (Utilising a modern HPC environment)
- Vasp best practices (Linköping, June 2019) + (VASP best practices)
- Vasp best practices (Uppsala, June 2019) + (VASP best practices)
- Vasp best practices (Stockholm, May 2019) + (VASP best practices)
- VASP best practices workshop (NSC, Oct 2020) + (VASP best practices workshop)
- VASP best practices workshop (NSC, Feb 2022) + (VASP best practices workshop)
- Vasp - Basic Theory and Best Practices, HPC2N, October 2019 + (Vasp - Basic Theory and Best Practices)
- Version Control Workshop, HPC2N + (Version Control Workshop)
- Visualisation and interactivity in HPC (LUNARC, March 2019) + (Visualisation and interactivity in HPC - The LUNARC HPC Desktop)
- Vapor + (Visualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers)
- Grace + (WYSIWYG tool to make two-dimensional plots of scientific data)
- PconsC for Fido + (Web hosting for PconsC)
- Working effectively with HPC systems (NSC, April 2021) + (Working effectively with HPC systems)
- Schrödinger materials science suite workshop (Linköping, November 2017) + (Workshop on using the Schrödinger materials science suite with Quantum Espresso)
- Writing Parallel Applications Using MPI (Stockholm, December 2019) + (Writing Parallel Applications Using MPI)
- MPI (PDC November 2014) + (Writing parallel applications using MPI)
- MPI (PDC December 2017) + (Writing parallel applications using MPI)
- MPI (PDC December 2015) + (Writing parallel applications using MPI)
- Xds + (X-ray Detector Software for processing single-crystal monochromatic diffraction data recorded by the rotation method.)
- FEFF + (a real-space full multiple scattering (RSFMS) Green's function method)
- GAMESS + (ab initio quantum chemistry)
- MPQC + (ab initio quantum chemistry)
- Jaguar + (ab initio quantum mechanics)
- Elk + (all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features)
- RSPt + (all-electron full-potential linearised muffin-tin orbital (FP-LMTO) code with many features. Dynamic mean field capabilities is included in the code.)
- BLAT + (an alignment tool like BLAST, but it is structured differently.)
- NCL + (analysis and visualization)
- Category:Computational electromagnetics + (application of computer science methods to solve and model electromagnetic fields)
- Category:Solid mechanics + (application of computer science methods to solve continuum solid mechanics problems)
- Category:Computational chemistry + (application of computer science methods to solve chemical problems)
- Category:Climate research + (application of computer science methods to study the Earth's climate)
- Category:Computational materials science + (applying the properties of matter to various areas of science and engineering)
- Charmm + (atomistic and molecular simulations code)
- CP2K + (atomistic and molecular simulations code)
- Cyana + (biological macromolecule structure calculation based on NMR conformational constraints)
- Neolith + (capability cluster resource of 60 TFLOPS with full bisection infiniband interconnect)
- Abisko + (capability resource of 153 TFLOPS with full bisectional infiniband interconnect)
- LAMMPS + (classical molecular dynamics code)
- NCAR diagnostic packages + (climate model diagnostics)
- Matter + (cluster resource of 37 TFLOPS dedicated to materials science)
- Kalkyl + (cluster resource of about 21 TFLOPS)
- Grad + (cluster resource primarily used for SweGrid)
- Category:Grid computing + (combines computers from multiple administrative domains)
- DIANA + (commercial FEM package)
- STAR-CD + (commercial computational fluid dynamics package)
- PowerFLOW + (commercial computational fluid dynamics package)
- StarCCM + (commercial computational fluid dynamics package)
- Fluent + (commercial computational fluid dynamics package)
- Fire + (commercial computational fluid dynamics package)
- GNU compiler collection + (compiler collection for a number of languages including C, C++ and Fortran)
- PathScale + (compiler suite)
- PGI + (compiler suite)
- Intel compiler suite + (compilers for C, C++ and Fortran)
- Mathematica + (computational software for technical computing)
- NCO + (data analysis)
- CDO + (data analysis)
- CS-Rosetta + (de novo protein structure generation)
- ABINIT + (density-functional theory code)
- OpenMX + (density-functional theory code)
- SIESTA + (density-functional theory code for very large systems)
- Ccp4 + (determining macromolecular structures by X-ray crystallography)
- MOLDEN + (display ab initio molecular densities)
- Ruby + (dynamic, reflective, general-purpose object-oriented programming language)
- MKL + (efficient mathematics library)
- ACML + (efficient mathematics library)
- VASP + (electronic structure calculation)
- CASTEP + (electronic structure calculation)
- Greens + (electronic structure codes based on the KKRASA Green's function technique)
- Muscle + (fast, high-quality multiple sequence alignment)
- Meep + (finite-difference time-domain simulation software package)
- Abaqus + (finite-element package)
- ASE + (framework for setting up and analyzing atomistic simulations)
- OpenFOAM + (free, open source CFD software package by OpenCFD Ltd)
- Exciting-code + (full-potential all-electron density-functional-theory (DFT) package based on the linearized augmented plane-wave (LAPW) method)
- EC-Earth + (global climate model)
- CESM1 + (global climate model)
- NorESM + (global climate model)
- SAM + (hidden Markov model analysis of biological sequences)
- Category:Performance optimisation + (improving the computational efficiency of an application)
- Category:Bioinformatics + (information handling in biology)
- Shake n bake + (is a computer program based on Shake-and-Bake, a dual-space direct-methods procedure for determining crystal structures from X-ray diffraction data.)
- Hkl2map + (is a graphical user-interface for macromolecular phasing)
- Pymol + (is a molecular visualization system.)
- Shelx + (is a set of programs for the determination of small (SM) and macromolecular (MM) crystal structures by single crystal X-ray and neutron diffraction.)
- Phenix + (is a software suite for the automated determination of macromolecular structures using X-ray crystallography and other methods)
- ANSYS + (large modeling suite)
- Yambo + (many-body calculations in solid state and molecular physics)
- Inspector + (memory error and thread checker)
- Amber + (molecular dynamics)
- ESPResSo + (molecular dynamics of soft matter systems)
- Desmond + (molecular dynamics package)
- Mafft + (multiple sequence alignment program)
- Octave + (numerical computation and visualisation language)
- Category:HPC training + (offering training and education to the SNIC communities in HPC related matters.)
- Open MPI + (open source [[MPI]] library)
- SciPy + (open-source software for mathematics, science, and engineering.)
- Category:Performance tuning + (optimisation of simulation applications with respect to an optimal use of hardware features.)
- Category:Neuroinformatics + (organization of neuroscience data)
- FASTA + (package for aligning nucleotide or amino acid sequences)
- BLAST + (package for aligning nucleotide or amino acid sequences)
- PHYLIP + (package for inference of phylogenies)
- Simson + (package for solving the Navier-Stokes equations for incompressible channel and boundary layer flows)
- HMMER + (package for working with profile hidden Markov models (HMM))
- Environment modules + (package to manage the systems and application software)
- NAMD + (parallel molecular dynamics code)
- Test training 2014 + (parallel performance optimization tools)
- Test training 2012 + (parallel performance optimization tools)
- Dacapo + (plane-wave DFT)
- CPMD + (plane-wave DFT)
- GENE + (plasma microturbulence code)
- ClustalW + (popular multiple sequence aligner)
- Gnuplot + (portable command-line driven graphing utility)
- Dalton + (powerful molecular electronic structure program.)
- TAU + (profiling and tracing tool-kit for performance analysis of parallel programs)
- Matlab + (programming language with extensive plotting and graphics functionalities)
- Category:Parallel programming + (programming with multiple threads or processes)
- Rosetta + (protein structure prediction suite)
- GPAW + (real-space DFT)
- POV-Ray + (render high-quality images of three dimensional objects)
- Halvan + (shared-memory computer with 64 cores and 2 TB of memory)
- Efield + (simulation environment for electromagnetic simulations)
- Category:Visualisation + (software for graphical representation of data)
- Coot + (software for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data)
- Molsim + (software for molecular dynamic, Monte Carlo, and Brownian dynamics simulation)
- Totalview + (source code defect analysis tool)
- R + (statistical computing and visualisation language.)
- Category:Structural biology + (structural and functional analysis of proteins and their biomolecular complexes)
- NumPy + (the fundamental package needed for scientific computing with Python)
- Bioscope + (the pipeline stack that comes with the solid sequence platform)
- VTune Amplifier + (threading and performance optimization tool)
- Glenn + (throughput cluster resource)
- Hebbe + (throughput cluster resource)
- Beda + (throughput cluster resource)
- Kappa + (throughput cluster resource of 26 TFLOPS)
- Platon + (throughput cluster resource of 26 TFLOPS)
- Alarik + (throughput cluster resource of 40 TFLOPS)
- Ferlin + (throughput cluster resource of 58 TFLOPS)
- Siri + (throughput resource for SweGrid)
- Aurora + (throughput/general purpose cluster resource)
- Octopus + (time dependent density-functional theory code)
- Edge + (unstructured CFD solver)
- Category:GPU computing + (use of graphics processing units (GPU or simply "graphics cards") in scientific computation)
- Category:Computational science + (using computers to analyze and solve scientific problems)
- Category:Computational fluid dynamics + (using numerical methods to solve and analyze problems that involve fluid flows)
- GROMACS + (versatile package for molecular dynamics)
- VMD + (visualise and analyse large biomolecular systems)
- P4VASP + (visualization suite for VASP)
- Gaussian + (widely used quantum chemistry software)
- SWIG + (wrap fast libraries for use in high level languages)