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Field Description
ABINIT Computational materials science
Computational chemistry
density-functional theory code
ABySS Bioinformatics A parallel assembler for short read sequence data
ACML System tool
Numerical library
efficient mathematics library
ANFO Bioinformatics A parallel assembler for short read sequence data
ANNOVAR Bioinformatics Functional annotation of genetic variants from high-throughput sequencing data
ANSYS Computational fluid dynamics large modeling suite
ARC client Grid computing
Swestore
tool for accessing the Grid resources
ASE Computational materials science framework for setting up and analyzing atomistic simulations
Ab wtp Bioinformatics Alignment tool for SOLiD transcript reads
Abaqus Solid mechanics finite-element package
Amber Computational chemistry
Molecular dynamics
molecular dynamics
BEDTools Bioinformatics BEDTools is a software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Feature Format (GFF) format
BLAST Bioinformatics package for aligning nucleotide or amino acid sequences
BLAT Bioinformatics an alignment tool like BLAST, but it is structured differently.
BWA Bioinformatics A fast light-weighted tool that aligns relatively short sequences (queries) to a sequence database (target).
BclConverter Bioinformatics Converts bcl files to Qseq files.
BioPerl Bioinformatics A community effort to produce Perl code which is useful in biology.
BioPython Bioinformatics A set of freely available tools for biological computation written in Python by an international team of developers.
Bioscope Bioinformatics the pipeline stack that comes with the solid sequence platform
Bowtie Bioinformatics Bowtie is an ultrafast, memory-efficient short read aligner.
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