ANNOVAR

From SNIC Documentation

Jump to: navigation, search

ANNOVAR is an efficient software tool to utilize update-to-date information to functionally annotate genetic variants detected from diverse genomes (including human genome hg18, hg19, as well as mouse, worm, fly, yeast and many others). Given a list of variants with chromosome, start position, end position, reference nucleotide and observed nucleotides, ANNOVAR can perform:

Availability

Resource Centre Description
Kalkyl UPPMAX cluster resource of about 21 TFLOPS

Tips and tricks

License

License: Free.

Experts

No experts have currently registered expertise on this specific subject. List of registered field experts:
Field AE FTE General activities
Anders Sjölander (UPPMAX) UPPMAX Bioinformatics 100100 Bioinformatics support and training, job efficiency monitoring, project management
Björn Viklund (UPPMAX) UPPMAX Bioinformatics
Containers
100100 Bioinformatics, containers, software installs at UPPMAX
Henric Zazzi (PDC) PDC Bioinformatics 100100 Bioinformatics Application support
Martin Dahlö (UPPMAX) UPPMAX Bioinformatics 1010 Bioinformatic support

Links

Personal tools
Namespaces
Variants
Actions
People
For Staff
Toolbox