Property:Description

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Property type: string

This property provides a "shortest possible" type of description, typically less than a short sentence, used for example to describe a piece of software, or a resource, or a method or anything else really.

It should be used as such: 

<page name> is (a/an/the/...) [[description::as little text as possible]].

 e.g:

 HMMER is a [[description::software package for working with profile hidden Markov models (HMM)]].

Note that neither "page title", nor "is a", nor the full stop character are part of the description, much like Debian package descriptions.

The intended benefit for using this property would be within dynamically generated tables, where it will typically appear as short "description" column.

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Showing 100 pages using this property.
C
Course: Efficient MD simulations at HPC2N (February 2020) +
Efficient MD simulations at HPC2N  +
Course: Python for Scientific Computing +
Python for Scientific Computing  +
Cufflinks +
Assembles transcripts in RNA-Seq samples and calculates their abundances  +
Cyana +
biological macromolecule structure calculation based on NMR conformational constraints  +
D
DDT +
Debugger  +
DDT (PDC September 2014) +
Debugging applications using DDT  +
DIANA +
commercial FEM package  +
Dacapo +
plane-wave DFT  +
Dalton +
powerful molecular electronic structure program.  +
Dalton CPP-LR parallelization +
Parallelization of the coupled cluster complex polarization propagator module in the Dalton program  +
Data Management Seminar Online +
Data management seminar recording  +
Data management seminar (UPPMAX, March 2016) +
Data management  +
Datahandling using R tidyverse (Lund, November 2019) +
Introduction to data handling using R tidyverse in a modern software environment  +
Debugging of HPC applications, September 2019 +
Debugging of HPC applications  +
Deep Dive Code Analysis and Optimization (Linkoeping, February 2017) +
Allinea Performance and Debugging Tools Workshop  +
Deep Dive Code Analysis and Optimization (Lund, February 2017) +
Allinea Performance and Debugging Tools Workshop  +
Deep Dive Code Analysis and Optimization (Stockholm, February 2017) +
Allinea Performance and Debugging Tools Workshop  +
Desmond +
molecular dynamics package  +
Develop multi-category LIM3 sea-ice capabilities in EC-Earth 3 +
Feature request to support multi-category sea-ice in the IFS component of EC-Earth 3.  +
E
EC-Earth +
global climate model  +
EC-Earth compilation and performance analysis: Beskow +
Port EC-Earth to Beskow and complete performance/scaling tests.  +
EC-Earth/COSP code analysis +
Complete performance profiling of the EC-Earth model including the COSP satellite simulator.  +
EMBOSS +
A free Open Source software analysis package developed for the molecular biology.  +
EMMAX +
A statistical test for large scale human or model organism association mapping accounting for the sample structure.  +
EMTO +
Exact Muffin-Tin Orbitals method, an electronic structure code based on the Green's function technique  +
EMTOx +
Exact Muffin-Tin Orbitals method (x), an electronic structure code based on the Green's function technique  +
ENCCS/PDC VeloxChem Workshop: Quantum Chemistry Towards Pre-exascale and Beyond (March 2022) +
ENCCS/PDC VeloxChem Workshop: Quantum Chemistry Towards Pre-exascale and Beyond  +
ENCCS/PDC VeloxChem Workshop: Quantum Chemistry from Laptop to HPC (May 2021) +
ENCCS/PDC VeloxChem Workshop: Quantum Chemistry from Laptop to HPC  +
ESPResSo +
molecular dynamics of soft matter systems  +
Edge +
unstructured CFD solver  +
Editing Cluster architecture and job submission, February 2022 +
Cluster architecture and job submission  +
Efield +
simulation environment for electromagnetic simulations  +
Electronic Structure Workshop (Linköping, March 2017) +
Electronic Structure / Seminars and discussion sessions  +
Elk +
all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features  +
Enabling Xnavis for Massively Parallel Simulations of Wind Farms +
Parallel I/O Implementation and Communication Optimization on Xnavis Wind Farm Simulation Code  +
Environment modules +
package to manage the systems and application software  +
Erik +
Prototype system featuring 68 Nvidia Tesla K20m GPU cards and 2 Xeon Phi cards  +
Essense Code Optimisation +
Essense Code Analysis and Optimisation  +
Exciting-code +
full-potential all-electron density-functional-theory (DFT) package based on the linearized augmented plane-wave (LAPW) method  +
F
FASTA +
package for aligning nucleotide or amino acid sequences  +
FASTX +
A collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.  +
FEFF +
a real-space full multiple scattering (RSFMS) Green's function method  +
FFTW +
Freely available high performance library to perform fast Fourier transformations  +
FastQC +
Aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.  +
Ferlin +
throughput cluster resource of 58 TFLOPS  +
Fido +
Easy access to safe and reliable hosting and computation for Swedish bioinformatics.  +
Fire +
commercial computational fluid dynamics package  +
Fluent +
commercial computational fluid dynamics package  +
FreeBayes +
Bayesian SNP and short indel caller from the Marth lab (who created Mosaik).  +
G
GAMESS +
ab initio quantum chemistry  +
GARLI +
Performs heuristic phylogenetic searches ...  +
GATK +
Structured software library for writing analysis tools for next-generation sequencing data.  +
GCTA +
A tool for Genome-wide Complex Trait Analysis  +
GENE +
plasma microturbulence code  +
GNU compiler collection +
compiler collection for a number of languages including C, C++ and Fortran  +
GPAW +
real-space DFT  +
GPU computing +
use of graphics processing units (GPU or simply "graphics cards") in scientific computation  +
GROMACS +
versatile package for molecular dynamics  +
Gaussian +
widely used quantum chemistry software  +
Gaussian Workshop, HPC2N, 14-15 May 2018 +
Gaussian Workshop at HPC2N in Umeå  +
Glenn +
throughput cluster resource  +
Gnuplot +
portable command-line driven graphing utility  +
Grace +
WYSIWYG tool to make two-dimensional plots of scientific data  +
Grad +
cluster resource primarily used for SweGrid  +
Greens +
electronic structure codes based on the KKRASA Green's function technique  +
Grid computing +
combines computers from multiple administrative domains  +
H
HMMER +
package for working with profile hidden Markov models (HMM)  +
HPC Tools for the Modern Era (PDC, October 2018) +
HPC Tools for the Modern Era  +
HPC training +
offering training and education to the SNIC communities in HPC related matters.  +
HPC2N storage +
HPC2N Swestore storage node of 400Tb  +
HYPE Code Parallelisation +
Performance Analysis and Parallelisation of SMHI's HYPE Code  +
Halvan +
shared-memory computer with 64 cores and 2 TB of memory  +
Handling large data within SNIC, using Swestore - 15 March 2022 +
Handling large data within SNIC, using Swestore  +
Hebbe +
throughput cluster resource  +
Heterogeneous computing with performance modelling, Umeå, 2020-11-(4-5) +
Heterogeneous computing with performance modelling  +
Hierarchical modules and software selection (Lund, December 2017) +
Hierarchical modules and software selection  +
Hierarchical modules and software selection (Lund, March 2018) +
Hierarchical modules and software selection  +
Hierarchical modules and software selection (Lund, October 2018) +
Hierarchical modules and software selection  +
Hkl2map +
is a graphical user-interface for macromolecular phasing  +
How to work effectively on Tetralith (Stockholm Dec 2018) +
How to work effectively on Tetralith  +
How to work effectively on Tetralith / Sigma (Linköping Nov 2018) +
How to work effectively on Tetralith  +
I
Implementation of parallel NetCDF output and COSP in OpenIFS +
Assist researchers from Göteborg in including parallel NetCDF IO support and the COSP module in the OpenIFS model  +
Improved FFT and I/O for the Pencil code +
Enabling support as part of the Prace DECI 8 program  +
Improving MPI communication latency on euroben kernels +
Improving the MPI collective performance by network aware communication  +
Infrastructure for the European Network for Earth System modelling - Phase 2 +
European network of distributed e-infrastructure to support Earth system modelling.  +
Inspector +
memory error and thread checker  +
Integration of OpenIFS into EC-Earth3 +
Replace the atmospheric component of EC-Earth (IFS) with the OpenIFS model (c38r1).  +
Intel Cluster Studio/HPC Training (HPC2N, November 2015) +
Intel Cluster Studio/HPC Training at HPC2N  +
Intel Compiler (Lunarc November 2016) +
Using the Intel® compiler and performance tools  +
Intel MPI +
MPI library  +
Intel compiler suite +
compilers for C, C++ and Fortran  +
Intel development / HPC tools (HPC2N, May 2016) +
Intel development / HPC tools  +
Intel oneAPI webinar (Mar 2020) +
Intel oneAPI Overview Webinar  +
Intermediate Topics in MPI (June 2022) +
Intermediate Topics in MPI  +
Introduction to Deep Learning, Umeå (22-23 November 2018) +
Introduction to Deep Learning  +
Introduction to Distributed Memory Programming and MPI (HPC2N, April 23, 2015) +
Introduction to Distributed Memory Programming and MPI  +
Introduction to GPU programming with CUDA (PDC, May 2015) +
Introduction to GPU programming with CUDA  +
Introduction to GPU programming: When and how to use GPU-acceleration?, HPC2N, 5 November 2019 +
Introduction to GPU programming: When and how to use GPU-acceleration?  +
Introduction to Git, HPC2N, 2021-11-(9-12) +
Introduction to Git  +
Introduction to Git, Umeå (2020-09-30) +
Introduction to Git  +
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