Semantic search
| Field | Description | |
|---|---|---|
| Exciting-code | Computational chemistry Computational materials science | full-potential all-electron density-functional-theory (DFT) package based on the linearized augmented plane-wave (LAPW) method |
| FASTA | Bioinformatics | package for aligning nucleotide or amino acid sequences |
| FASTX | Bioinformatics | A collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. |
| FEFF | Computational chemistry Computational materials science | a real-space full multiple scattering (RSFMS) Green's function method |
| FFTW | Computational science Performance library | Freely available high performance library to perform fast Fourier transformations |
| FastQC | Bioinformatics | Aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. |
| Fire | Computational fluid dynamics | commercial computational fluid dynamics package |
| Fluent | Computational fluid dynamics | commercial computational fluid dynamics package |
| FreeBayes | Bioinformatics | Bayesian SNP and short indel caller from the Marth lab (who created Mosaik). |
| GAMESS | Computational chemistry Computational materials science | ab initio quantum chemistry |
| GARLI | Bioinformatics | Performs heuristic phylogenetic searches ... |
| GATK | Bioinformatics | Structured software library for writing analysis tools for next-generation sequencing data. |
| GCTA | Bioinformatics | A tool for Genome-wide Complex Trait Analysis |
| GENE | Plasma turbulence | plasma microturbulence code |
| GNU compiler collection | System tool | compiler collection for a number of languages including C, C++ and Fortran |
| GPAW | Computational chemistry Computational materials science | real-space DFT |
| GROMACS | Computational chemistry Bioinformatics Molecular dynamics | versatile package for molecular dynamics |
| Gaussian | Computational chemistry | widely used quantum chemistry software |
| Gnuplot | Visualisation | portable command-line driven graphing utility |
| Grace | Visualisation | WYSIWYG tool to make two-dimensional plots of scientific data |
| Greens | Computational materials science | electronic structure codes based on the KKRASA Green's function technique |
| HMMER | Bioinformatics | package for working with profile hidden Markov models (HMM) |
| Hkl2map | Structural biology | is a graphical user-interface for macromolecular phasing |
| Inspector | System tool | memory error and thread checker |
| Intel MPI | System tool | MPI library |
| Intel compiler suite | System tool | compilers for C, C++ and Fortran |
| Jaguar | Computational chemistry | ab initio quantum mechanics |
| LAMMPS | Molecular dynamics Computational materials science | classical molecular dynamics code |
| MKL | System tool | efficient mathematics library |
| MOLDEN | Computational chemistry Computational materials science | display ab initio molecular densities |
| MPQC | Computational chemistry | ab initio quantum chemistry |
| MSC Nastran | Solid mechanics | Finite Element Analysis (FEA) solver |
| MUSIC | Bioinformatics | C++ library for interprocess communication in large scale neuronal network simulations |
| MVAPICH2 | System tool | MPI library |
| Mafft | Bioinformatics | multiple sequence alignment program |
| Mathematica | Scientific computing | computational software for technical computing |
| Matlab | Visualisation Programming language | programming language with extensive plotting and graphics functionalities |
| Meep | Computational materials science | finite-difference time-domain simulation software package |
| Molsim | Computational chemistry | software for molecular dynamic, Monte Carlo, and Brownian dynamics simulation |
| MrBayes | Bioinformatics | Bayesian estimation of phylogeny |
| Muscle | Bioinformatics | fast, high-quality multiple sequence alignment |
| NAMD | Computational chemistry Molecular dynamics | parallel molecular dynamics code |
| NCAR diagnostic packages | Climate research | climate model diagnostics |
| NCL | Climate research | analysis and visualization |
| NCO | Climate research | data analysis |
| NMRPipe | Bioinformatics | NMR spectroscopy data analysis suite |
| NorESM | Climate research | global climate model |
| NumPy | Scientific computing | the fundamental package needed for scientific computing with Python |
| Octave | Visualisation Scientific computing | numerical computation and visualisation language |
| Octopus | Computational chemistry Computational materials science | time dependent density-functional theory code |
