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 Research areaLicenseDescription
Exciting-codeFreefull-potential all-electron density-functional-theory (DFT) package based on the linearized augmented plane-wave (LAPW) method
FASTAFreepackage for aligning nucleotide or amino acid sequences
FASTXFreeA collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
FEFFRequires licensea real-space full multiple scattering (RSFMS) Green's function method
FFTWFreeFreely available high performance library to perform fast Fourier transformations
FastQCFreeAims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines.
FireRequires licensecommercial computational fluid dynamics package
FluentRequires licensecommercial computational fluid dynamics package
FreeBayesBayesian SNP and short indel caller from the Marth lab (who created Mosaik).
GAMESSFreeab initio quantum chemistry
GARLIPerforms heuristic phylogenetic searches ...
GATKFreeStructured software library for writing analysis tools for next-generation sequencing data.
GCTAA tool for Genome-wide Complex Trait Analysis
GENEFreeplasma microturbulence code
GNU compiler collectionFreecompiler collection for a number of languages including C, C++ and Fortran
GPAWFreereal-space DFT
GROMACSFreeversatile package for molecular dynamics
GaussianSite licensewidely used quantum chemistry software
GnuplotFreeportable command-line driven graphing utility
GraceFreeWYSIWYG tool to make two-dimensional plots of scientific data
GreensFreeelectronic structure codes based on the KKRASA Green's function technique
HMMERFreepackage for working with profile hidden Markov models (HMM)
Hkl2mapFreeis a graphical user-interface for macromolecular phasing
InspectorSite licensememory error and thread checker
Intel MPISite licenseMPI library
Intel compiler suiteSite licensecompilers for C, C++ and Fortran
JaguarRequires licenseab initio quantum mechanics
LAMMPSFreeclassical molecular dynamics code
MKLSite licenseefficient mathematics library
MOLDENFreedisplay ab initio molecular densities
MPQCFreeab initio quantum chemistry
MSC NastranRequires licenseFinite Element Analysis (FEA) solver
MUSICFreeC++ library for interprocess communication in large scale neuronal network simulations
MVAPICH2FreeMPI library
MafftFreemultiple sequence alignment program
MathematicaSite licensecomputational software for technical computing
MatlabSite licenseprogramming language with extensive plotting and graphics functionalities
MeepFreefinite-difference time-domain simulation software package
MolsimRequires licensesoftware for molecular dynamic, Monte Carlo, and Brownian dynamics simulation
MrBayesFreeBayesian estimation of phylogeny
MuscleFreefast, high-quality multiple sequence alignment
NAMDFreeparallel molecular dynamics code
NCAR diagnostic packagesFreeclimate model diagnostics
NCLFreeanalysis and visualization
NCOFreedata analysis
NMRPipeFreeNMR spectroscopy data analysis suite
NorESMFreeglobal climate model
NumPyFreethe fundamental package needed for scientific computing with Python
OctaveFreenumerical computation and visualisation language
OctopusFreetime dependent density-functional theory code
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