Difference between revisions of "Application Experts"

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#REDIRECT [[Application experts]]
 
===Torben Rasmussen, NSC===
 
===Torben Rasmussen, NSC===
 
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*Working on benchmarking, optimization, scaling issues  
 
*Working on benchmarking, optimization, scaling issues  
 
*Working on EU projects, e.g.,  IS-ENES, PRACE and also with SMHI
 
*Working on EU projects, e.g.,  IS-ENES, PRACE and also with SMHI
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|}
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===Mattias Chevalier, PDC===
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{|
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|- valign="top"
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[[image:Mattias_chevalier_x150_y185.jpg|frame|left|Mattias Chevalier]]
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*Application expert in Computational Fluid Dynamics (CFD), SeRC Coordinator
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*Work at PDC since 2010
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*Handle advanced user support, software installations, etc.
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*PhD 2004 in Fluid Dynamics, background in aeronautic and truck applications of fluid dynamics
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*Keywords : Fluent, Star-CCM+, PowerFLOW, ANSA, ICEMCFD, Catia, FieldView, EnSight, Edge, ParaView, Matlab, Fortran, C/C++, OpenMP, MPI
 
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*Main scientific work in the field of sequence analysis and bioinformatic protein family characterisation.
 
*Main scientific work in the field of sequence analysis and bioinformatic protein family characterisation.
 
*Have used [[HMMER]], [[BLAST]] and [[MSA]] extensively.
 
*Have used [[HMMER]], [[BLAST]] and [[MSA]] extensively.
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===Joachim Hein, Lunarc & EPCC===
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* Parallel expert
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* Working at Lunarc, Lund University, since 2010 (part time)
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* Working at EPCC, The University of Edinburgh, since 2002 (part time)
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* Doctorate in theoretical Physics (Lattice quantum field theory), Hamburg University, Germany, 1996
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* Areas of expertise include:
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** Message Passing with MPI
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** Shared memory programming with OpenMP
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** Code optimisation in C and Fortran
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* Application areas and applications worked on include: Lattice quantum field theory, Biomolecular systems (Applications: NAMD, Gromacs), Computational plasma physics (Applications: Centori, GS2, GEM), Computational chemistry (Applications: Siesta, Castep, CP2K, GPAW), Computational fluid dynamics (Application: EBL3, OpenFOAM)
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* HPC training (general HPC, MPI, OpenMP)
 
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[[image:|frame|left|Rossen Apostolov]]
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[[image:Rossen.jpg|frame|left|Rossen Apostolov]]
 
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*Application expert in Molecular Dynamics simulations
 
*Application expert in Molecular Dynamics simulations
 
*Working at PDC since 2010
 
*Working at PDC since 2010
 
*Ph.D. 2008 in Computational Biophysics
 
*Ph.D. 2008 in Computational Biophysics
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*Working on [[Gromacs]] development
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*Working on [[GROMACS|Gromacs]] development
 
*Keywords : Molecular Dynamics, Gromacs, GPGPU computing
 
*Keywords : Molecular Dynamics, Gromacs, GPGPU computing
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===Lilit Axner, PDC/KTH===
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[[image:lilit.jpg|frame|left|Lilit Axner]]
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*Application expert in Computational Fluid Dynamics as well as Project manager for EU projects
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*Works at PDC since 2010
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*Ph.D. in Computer Science (2007)
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*Previously worked at Dutch National Supercomputer Center (SARA)
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*Experience in Lattice Boltzmann method, domain decomposition, load balancing, performance benchmarking, parallelization, mesh generation.
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*Managing the following projects [http://www.prace-ri.eu/ Prace], [http://www.deisa.eu/ Deisa], [http://www.scalalife.eu/ ScalaLife]
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**Assisting applicants of these projects
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===Daniel Spångberg, UPPMAX===
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{|
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|- valign="top"
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[[image:daniels.jpg|frame|left|Daniel Spångberg]]
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*Application expert in molecular dynamics
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*Works at UPPMAX since 2004
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*Handles support, primarily of molecular dynamics simulations
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*Develops software, mainly related to molecular simulations
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*Ph.D. in 2003
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*User of [[Gaussian]], [[GAMESS]], [[Turbomole]], [[CRYSTAL]], [[VASP]], [[CPMD]]
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===Mattias Slabanja, C3SE===
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|- valign="top"
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[[image:ms.jpg|frame|left|Mattias Slabanja]]
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* Application expert, "modeling of materials"
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* Work at C3SE
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* Computational physics background (e.g. [[VASP]] user)
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* Recent AE related activities includes
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** contributions to the [[LAMMPS]] interface in the [[ASE]] framework
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** contributions to the [[SIESTA]] interface in the [[ASE]] framework
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|}
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===Soon-Heum "Jeff" Ko, NSC===
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{|
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|- valign="top"
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[[image:Jeff.jpg|frame|left|Soon-Heum "Jeff" Ko]]
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|
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*Application expert in Computational Fluid Dynamics
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*Work at NSC since 2011
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*Ph.D. in 2008
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*Two years of postdoctoral experience in computational science (Code porting to scientific frameworks, hybrid CFD-Md simulation with scheduling of coupled applications)
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*Working on parallelization / optimization
 
|}
 
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Latest revision as of 13:38, 8 July 2011

Redirect to:

Torben Rasmussen, NSC

Torben Rasmussen
  • Application expert in computational chemistry
  • Work at NSC since 2008
  • Handle user relations, general support, software installations, etc.
  • Ph.D. in 2001
  • Five years of postdoctoral experience in the field covering applications within organic chemistry, biochemistry, and life science
  • Have used Gaussian and Jaguar extensively
  • Experience with parametrization of molecular mechanics force fields

Chandan Basu, NSC

Chandan Basu
  • Ph.D in computational Physics
  • Working at NSC since 2009
  • Working on benchmarking, optimization, scaling issues
  • Working on EU projects, e.g., IS-ENES, PRACE and also with SMHI

Mattias Chevalier, PDC

Mattias Chevalier
  • Application expert in Computational Fluid Dynamics (CFD), SeRC Coordinator
  • Work at PDC since 2010
  • Handle advanced user support, software installations, etc.
  • PhD 2004 in Fluid Dynamics, background in aeronautic and truck applications of fluid dynamics
  • Keywords : Fluent, Star-CCM+, PowerFLOW, ANSA, ICEMCFD, Catia, FieldView, EnSight, Edge, ParaView, Matlab, Fortran, C/C++, OpenMP, MPI

Johan Raber, NSC

Johan Raber
  • E-science coordinator
  • Work at NSC for two years as a Systems Expert
  • Handle user relations, general support etc.
  • PhD in Biophysics in 2007 at Uppsala University
  • MSc in Molecular Biotechnology Engineering
  • Long experience using Gaussian
  • Experience using GROMACS and Gaussian for QM/MD simulations

Joel Hedlund, NSC

Joel Hedlund
  • Application expert in bioinformatics.
  • Work at NSC since 2011.
  • Ph.D. in 2010.
  • Main scientific work in the field of sequence analysis and bioinformatic protein family characterisation.
  • Have used HMMER, BLAST and MSA extensively.

Joachim Hein, Lunarc & EPCC

  • Parallel expert
  • Working at Lunarc, Lund University, since 2010 (part time)
  • Working at EPCC, The University of Edinburgh, since 2002 (part time)
  • Doctorate in theoretical Physics (Lattice quantum field theory), Hamburg University, Germany, 1996
  • Areas of expertise include:
    • Message Passing with MPI
    • Shared memory programming with OpenMP
    • Code optimisation in C and Fortran
  • Application areas and applications worked on include: Lattice quantum field theory, Biomolecular systems (Applications: NAMD, Gromacs), Computational plasma physics (Applications: Centori, GS2, GEM), Computational chemistry (Applications: Siesta, Castep, CP2K, GPAW), Computational fluid dynamics (Application: EBL3, OpenFOAM)
  • HPC training (general HPC, MPI, OpenMP)

Jonathan Vincent, PDC

[[image:|frame|left|Jonathan Vincent]]

  • Application expert
  • Work at PDC since 2009
  • Handle advanced user support, software installations, etc.
  • Ph.D. 2000 in Semiconductor Physics, Postdoctoral experience in semiconductor physics and classical and quantum dynamics
  • Working on Benchmarking, code optimisation
  • Keywords : Cray XT6, Cray XE6, MPI, Benchmarking, Optimisation

Rossen Apostolov, PDC

Rossen Apostolov
  • Application expert in Molecular Dynamics simulations
  • Working at PDC since 2010
  • Ph.D. 2008 in Computational Biophysics
  • Working on Gromacs development
  • Keywords : Molecular Dynamics, Gromacs, GPGPU computing

Lilit Axner, PDC/KTH

Lilit Axner
  • Application expert in Computational Fluid Dynamics as well as Project manager for EU projects
  • Works at PDC since 2010
  • Ph.D. in Computer Science (2007)
  • Previously worked at Dutch National Supercomputer Center (SARA)
  • Experience in Lattice Boltzmann method, domain decomposition, load balancing, performance benchmarking, parallelization, mesh generation.
  • Managing the following projects Prace, Deisa, ScalaLife
    • Assisting applicants of these projects

Daniel Spångberg, UPPMAX

Daniel Spångberg
  • Application expert in molecular dynamics
  • Works at UPPMAX since 2004
  • Handles support, primarily of molecular dynamics simulations
  • Develops software, mainly related to molecular simulations
  • Ph.D. in 2003
  • User of Gaussian, GAMESS, Turbomole, CRYSTAL, VASP, CPMD


Mattias Slabanja, C3SE

File:Ms.jpg
Mattias Slabanja
  • Application expert, "modeling of materials"
  • Work at C3SE
  • Computational physics background (e.g. VASP user)
  • Recent AE related activities includes
    • contributions to the LAMMPS interface in the ASE framework
    • contributions to the SIESTA interface in the ASE framework


Soon-Heum "Jeff" Ko, NSC

Soon-Heum "Jeff" Ko
  • Application expert in Computational Fluid Dynamics
  • Work at NSC since 2011
  • Ph.D. in 2008
  • Two years of postdoctoral experience in computational science (Code porting to scientific frameworks, hybrid CFD-Md simulation with scheduling of coupled applications)
  • Working on parallelization / optimization
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