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Line 1: |
Line 1: |
− | | + | #REDIRECT[[Swestore iRODS is decommissioned]] |
− | '''Back to [https://snicdocs.nsc.liu.se/wiki/Swestore-iRODS Swestore-iRODS Documentation]'''
| |
− | | |
− | == Install the public key and add the repository ==
| |
− | vitlacil@host:~$ wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add -
| |
− | [sudo] password for vitlacil: *************************
| |
− | OK
| |
− | vitlacil@host:~$ wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add -
| |
− | OK
| |
− | vitlacil@host:~$ echo "deb [arch=amd64] https://packages.irods.org/apt/ $(lsb_release -sc) main" | sudo tee /etc/apt/sources.list.d/renci-irods.list
| |
− | deb [arch=amd64] https://packages.irods.org/apt/ xenial main
| |
− | vitlacil@host:~$ sudo apt-get update
| |
− | Hit:1 http://se.archive.ubuntu.com/ubuntu xenial InRelease
| |
− | Hit:2 http://se.archive.ubuntu.com/ubuntu xenial-updates InRelease
| |
− | Hit:3 http://se.archive.ubuntu.com/ubuntu xenial-backports InRelease
| |
− | Get:4 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB]
| |
− | Get:5 https://packages.irods.org/apt xenial InRelease [3 499 B]
| |
− | Get:6 http://security.ubuntu.com/ubuntu xenial-security/main amd64 DEP-11 Metadata [76,7 kB]
| |
− | Get:7 https://packages.irods.org/apt xenial/main amd64 Packages [31,8 kB]
| |
− | Get:8 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 DEP-11 Metadata [124 kB]
| |
− | Get:9 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 DEP-11 Metadata [2 464 B]
| |
− | Fetched 348 kB in 1s (306 kB/s)
| |
− | Reading package lists... Done
| |
− | | |
− | == List available packages ==
| |
− | vitlacil@host:~$ apt-cache search irods
| |
− | php-irods-prods - PHP client API for iRODS
| |
− | irods-auth-plugin-gsi - The integrated Rule-Oriented Data System
| |
− | irods-auth-plugin-krb - The integrated Rule-Oriented Data System
| |
− | irods-database-plugin-mysql - The integrated Rule-Oriented Data System
| |
− | irods-database-plugin-oracle - The integrated Rule-Oriented Data System
| |
− | irods-database-plugin-postgres - The integrated Rule-Oriented Data System
| |
− | irods-dev - The integrated Rule-Oriented Data System
| |
− | irods-externals-autoconf5ad3567c-0 - iRODS Build Dependency
| |
− | irods-externals-avro1.7.7-0 - iRODS Build Dependency
| |
− | irods-externals-avro1.8.2-0 - iRODS Build Dependency
| |
− | irods-externals-avro1.9.0-0 - iRODS Build Dependency
| |
− | irods-externals-aws-sdk-cpp1.4.89-0 - iRODS Build Dependency
| |
− | irods-externals-aws-sdk-cpp1.4.89-1 - iRODS Build Dependency
| |
− | irods-externals-boost1.60.0-0 - iRODS Build Dependency
| |
− | irods-externals-boost1.67.0-0 - iRODS Build Dependency
| |
− | irods-externals-catch22.3.0-0 - iRODS Build Dependency
| |
− | irods-externals-clang3.8-0 - iRODS Build Dependency
| |
− | irods-externals-clang6.0-0 - iRODS Build Dependency
| |
− | irods-externals-clang-runtime3.8-0 - iRODS Build Dependency
| |
− | irods-externals-clang-runtime6.0-0 - iRODS Build Dependency
| |
− | irods-externals-cmake3.5.2-0 - iRODS Build Dependency
| |
− | irods-externals-cmake3.11.4-0 - iRODS Build Dependency
| |
− | irods-externals-cppzmq4.1-0 - iRODS Build Dependency
| |
− | irods-externals-cppzmq4.2.3-0 - iRODS Build Dependency
| |
− | irods-externals-cpr1.3.0-0 - iRODS Build Dependency
| |
− | irods-externals-cpr1.3.0-1 - iRODS Build Dependency
| |
− | irods-externals-elasticlient0.1.0-0 - iRODS Build Dependency
| |
− | irods-externals-elasticlient0.1.0-1 - iRODS Build Dependency
| |
− | irods-externals-epm4.2-0 - iRODS Build Dependency
| |
− | irods-externals-fmt6.1.2-0 - iRODS Build Dependency
| |
− | irods-externals-fmt6.1.2-1 - iRODS Build Dependency
| |
− | irods-externals-imagemagick7.0.3-0 - iRODS Build Dependency
| |
− | irods-externals-imagemagick7.0.8-0 - iRODS Build Dependency
| |
− | irods-externals-jansson2.7-0 - iRODS Build Dependency
| |
− | irods-externals-json3.0.1-0 - iRODS Build Dependency
| |
− | irods-externals-json3.1.2-0 - iRODS Build Dependency
| |
− | irods-externals-json3.7.3-0 - iRODS Build Dependency
| |
− | irods-externals-libarchive3.1.2-0 - iRODS Build Dependency
| |
− | irods-externals-libarchive3.3.2-0 - iRODS Build Dependency
| |
− | irods-externals-libarchive3.3.2-1 - iRODS Build Dependency
| |
− | irods-externals-libs3a30e55e8-0 - iRODS Build Dependency
| |
− | irods-externals-libs3a30e55e8-1 - iRODS Build Dependency
| |
− | irods-externals-libs359b62371-0 - iRODS Build Dependency
| |
− | irods-externals-mungefs1.0.2-0 - iRODS Build Dependency
| |
− | irods-externals-mungefs1.0.3-0 - iRODS Build Dependency
| |
− | irods-externals-nanodbc2.13.0-0 - iRODS Build Dependency
| |
− | irods-externals-qpid-with-proton0.34-0 - iRODS Build Dependency
| |
− | irods-externals-qpid-with-proton0.34-1 - iRODS Build Dependency
| |
− | irods-externals-redis4.0.8-0 - iRODS Build Dependency
| |
− | irods-externals-redis4.0.10-0 - iRODS Build Dependency
| |
− | irods-externals-spdlog0.17.0-0 - iRODS Build Dependency
| |
− | irods-externals-spdlog1.5.0-0 - iRODS Build Dependency
| |
− | irods-externals-spdlog1.5.0-1 - iRODS Build Dependency
| |
− | irods-externals-zeromq4-14.1.3-0 - iRODS Build Dependency
| |
− | irods-externals-zeromq4-14.1.6-0 - iRODS Build Dependency
| |
− | irods-icommands - The integrated Rule-Oriented Data System
| |
− | irods-microservice-plugins-curl - The integrated Rule-Oriented Data System
| |
− | irods-resource-plugin-s3 - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-apply-access-time - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-audit-amqp - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-data-movement - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-data-replication - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-data-verification - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-python - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-storage-tiering - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-tiered-storage - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-unified-storage-tiering - The integrated Rule-Oriented Data System
| |
− | irods-rule-engine-plugin-update-collection-mtime - The integrated Rule-Oriented Data System
| |
− | irods-runtime - The integrated Rule-Oriented Data System
| |
− | irods-server - The integrated Rule-Oriented Data System
| |
− | vitlacil@host:~$
| |
− | | |
− | == Install iRODS iCommands ==
| |
− | vitlacil@host:~$ sudo apt install irods-icommands
| |
− | Reading package lists... Done
| |
− | Building dependency tree
| |
− | Reading state information... Done
| |
− | The following additional packages will be installed:
| |
− | irods-externals-avro1.7.7-0 irods-externals-boost1.60.0-0
| |
− | irods-externals-clang-runtime3.8-0 irods-externals-jansson2.7-0
| |
− | irods-externals-libarchive3.3.2-0 irods-externals-zeromq4-14.1.3-0
| |
− | irods-runtime python-cffi-backend python-chardet python-cryptography
| |
− | python-enum34 python-idna python-ipaddress python-ndg-httpsclient
| |
− | python-openssl python-pkg-resources python-psutil python-pyasn1
| |
− | python-requests python-six python-urllib3
| |
− | Suggested packages:
| |
− | python-cryptography-doc python-cryptography-vectors python-enum34-doc
| |
− | python-openssl-doc python-openssl-dbg python-setuptools python-psutil-doc
| |
− | python-ntlm
| |
− | The following NEW packages will be installed:
| |
− | irods-externals-avro1.7.7-0 irods-externals-boost1.60.0-0
| |
− | irods-externals-clang-runtime3.8-0 irods-externals-jansson2.7-0
| |
− | irods-externals-libarchive3.3.2-0 irods-externals-zeromq4-14.1.3-0
| |
− | irods-icommands irods-runtime python-cffi-backend python-chardet
| |
− | python-cryptography python-enum34 python-idna python-ipaddress
| |
− | python-ndg-httpsclient python-openssl python-pkg-resources python-psutil
| |
− | python-pyasn1 python-requests python-six python-urllib3
| |
− | 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded.
| |
− | Need to get 25,9 MB of archives.
| |
− | After this operation, 199 MB of additional disk space will be used.
| |
− | Do you want to continue? [Y/n] y
| |
− | Get:1 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-cffi-backend amd64 1.5.2-1ubuntu1 [58,1 kB]
| |
− | Get:2 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-pkg-resources all 20.7.0-1 [108 kB]
| |
− | Get:3 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-chardet all 2.3.0-2 [96,3 kB]
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− | Get:4 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-enum34 all 1.1.2-1 [35,8 kB]
| |
− | Get:5 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-idna all 2.0-3 [35,1 kB]
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− | Get:6 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-ipaddress all 1.0.16-1 [18,0 kB]
| |
− | Get:7 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-pyasn1 all 0.1.9-1 [45,1 kB]
| |
− | Get:8 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-six all 1.10.0-3 [10,9 kB]
| |
− | Get:9 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-cryptography amd64 1.2.3-1ubuntu0.2 [199 kB]
| |
− | Get:10 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-openssl all 0.15.1-2ubuntu0.2 [84,9 kB]
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− | Get:11 http://se.archive.ubuntu.com/ubuntu xenial/main amd64 python-ndg-httpsclient all 0.4.0-3 [25,1 kB]
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− | Get:12 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-psutil amd64 3.4.2-1ubuntu0.1 [55,4 kB]
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− | Get:13 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-urllib3 all 1.13.1-2ubuntu0.16.04.3 [58,4 kB]
| |
− | Get:14 http://se.archive.ubuntu.com/ubuntu xenial-updates/main amd64 python-requests all 2.9.1-3ubuntu0.1 [55,9 kB]
| |
− | Get:15 https://packages.irods.org/apt xenial/main amd64 irods-externals-avro1.7.7-0 amd64 1.0~xenial [1 566 kB]
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− | Get:16 https://packages.irods.org/apt xenial/main amd64 irods-externals-boost1.60.0-0 amd64 1.0~xenial [13,8 MB]
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− | Get:17 https://packages.irods.org/apt xenial/main amd64 irods-externals-clang-runtime3.8-0 amd64 1.0~xenial [374 kB]
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− | Get:18 https://packages.irods.org/apt xenial/main amd64 irods-externals-jansson2.7-0 amd64 1.0~xenial [162 kB]
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− | Get:19 https://packages.irods.org/apt xenial/main amd64 irods-externals-libarchive3.3.2-0 amd64 1.0~xenial [1 732 kB]
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− | Get:20 https://packages.irods.org/apt xenial/main amd64 irods-externals-zeromq4-14.1.3-0 amd64 1.0~xenial [568 kB]
| |
− | Get:21 https://packages.irods.org/apt xenial/main amd64 irods-runtime amd64 4.2.7 [5 854 kB]
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− | Get:22 https://packages.irods.org/apt xenial/main amd64 irods-icommands amd64 4.2.7 [989 kB]
| |
− | Fetched 25,9 MB in 17s (1 476 kB/s)
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− | Selecting previously unselected package python-cffi-backend.
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− | (Reading database ... 212721 files and directories currently installed.)
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− | Preparing to unpack .../python-cffi-backend_1.5.2-1ubuntu1_amd64.deb ...
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− | Unpacking python-cffi-backend (1.5.2-1ubuntu1) ...
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− | Selecting previously unselected package python-pkg-resources.
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− | Preparing to unpack .../python-pkg-resources_20.7.0-1_all.deb ...
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− | Unpacking python-pkg-resources (20.7.0-1) ...
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− | Selecting previously unselected package python-chardet.
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− | Preparing to unpack .../python-chardet_2.3.0-2_all.deb ...
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− | Unpacking python-chardet (2.3.0-2) ...
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− | Selecting previously unselected package python-enum34.
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− | Preparing to unpack .../python-enum34_1.1.2-1_all.deb ...
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− | Unpacking python-enum34 (1.1.2-1) ...
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− | Selecting previously unselected package python-idna.
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− | Preparing to unpack .../python-idna_2.0-3_all.deb ...
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− | Unpacking python-idna (2.0-3) ...
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− | Selecting previously unselected package python-ipaddress.
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− | Preparing to unpack .../python-ipaddress_1.0.16-1_all.deb ...
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− | Unpacking python-ipaddress (1.0.16-1) ...
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− | Selecting previously unselected package python-pyasn1.
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− | Preparing to unpack .../python-pyasn1_0.1.9-1_all.deb ...
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− | Unpacking python-pyasn1 (0.1.9-1) ...
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− | Selecting previously unselected package python-six.
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− | Preparing to unpack .../python-six_1.10.0-3_all.deb ...
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− | Unpacking python-six (1.10.0-3) ...
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− | Selecting previously unselected package python-cryptography.
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− | Preparing to unpack .../python-cryptography_1.2.3-1ubuntu0.2_amd64.deb ...
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− | Unpacking python-cryptography (1.2.3-1ubuntu0.2) ...
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− | Selecting previously unselected package python-openssl.
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− | Preparing to unpack .../python-openssl_0.15.1-2ubuntu0.2_all.deb ...
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− | Unpacking python-openssl (0.15.1-2ubuntu0.2) ...
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− | Selecting previously unselected package python-ndg-httpsclient.
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− | Preparing to unpack .../python-ndg-httpsclient_0.4.0-3_all.deb ...
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− | Unpacking python-ndg-httpsclient (0.4.0-3) ...
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− | Selecting previously unselected package python-psutil.
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− | Preparing to unpack .../python-psutil_3.4.2-1ubuntu0.1_amd64.deb ...
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− | Unpacking python-psutil (3.4.2-1ubuntu0.1) ...
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− | Selecting previously unselected package python-urllib3.
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− | Preparing to unpack .../python-urllib3_1.13.1-2ubuntu0.16.04.3_all.deb ...
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− | Unpacking python-urllib3 (1.13.1-2ubuntu0.16.04.3) ...
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− | Selecting previously unselected package python-requests.
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− | Preparing to unpack .../python-requests_2.9.1-3ubuntu0.1_all.deb ...
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− | Unpacking python-requests (2.9.1-3ubuntu0.1) ...
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− | Selecting previously unselected package irods-externals-avro1.7.7-0.
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− | Preparing to unpack .../irods-externals-avro1.7.7-0_1.0~xenial_amd64.deb ...
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− | Unpacking irods-externals-avro1.7.7-0 (1.0~xenial) ...
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− | Selecting previously unselected package irods-externals-boost1.60.0-0.
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− | Preparing to unpack .../irods-externals-boost1.60.0-0_1.0~xenial_amd64.deb ...
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− | Unpacking irods-externals-boost1.60.0-0 (1.0~xenial) ...
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− | Selecting previously unselected package irods-externals-clang-runtime3.8-0.
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− | Preparing to unpack .../irods-externals-clang-runtime3.8-0_1.0~xenial_amd64.deb ...
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− | Unpacking irods-externals-clang-runtime3.8-0 (1.0~xenial) ...
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− | Selecting previously unselected package irods-externals-jansson2.7-0.
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− | Preparing to unpack .../irods-externals-jansson2.7-0_1.0~xenial_amd64.deb ...
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− | Unpacking irods-externals-jansson2.7-0 (1.0~xenial) ...
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− | Selecting previously unselected package irods-externals-libarchive3.3.2-0.
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− | Preparing to unpack .../irods-externals-libarchive3.3.2-0_1.0~xenial_amd64.deb ...
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− | Unpacking irods-externals-libarchive3.3.2-0 (1.0~xenial) ...
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− | Selecting previously unselected package irods-externals-zeromq4-14.1.3-0.
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− | Preparing to unpack .../irods-externals-zeromq4-14.1.3-0_1.0~xenial_amd64.deb ...
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− | Unpacking irods-externals-zeromq4-14.1.3-0 (1.0~xenial) ...
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− | Selecting previously unselected package irods-runtime.
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− | Preparing to unpack .../irods-runtime_4.2.7_amd64.deb ...
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− | Unpacking irods-runtime (4.2.7) ...
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− | Selecting previously unselected package irods-icommands.
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− | Preparing to unpack .../irods-icommands_4.2.7_amd64.deb ...
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− | Unpacking irods-icommands (4.2.7) ...
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− | Processing triggers for man-db (2.7.5-1) ...
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− | Processing triggers for doc-base (0.10.7) ...
| |
− | Processing 1 added doc-base file...
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− | Setting up python-cffi-backend (1.5.2-1ubuntu1) ...
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− | Setting up python-pkg-resources (20.7.0-1) ...
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− | Setting up python-chardet (2.3.0-2) ...
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− | Setting up python-enum34 (1.1.2-1) ...
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− | Setting up python-idna (2.0-3) ...
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− | Setting up python-ipaddress (1.0.16-1) ...
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− | Setting up python-pyasn1 (0.1.9-1) ...
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− | Setting up python-six (1.10.0-3) ...
| |
− | Setting up python-cryptography (1.2.3-1ubuntu0.2) ...
| |
− | Setting up python-openssl (0.15.1-2ubuntu0.2) ...
| |
− | Setting up python-ndg-httpsclient (0.4.0-3) ...
| |
− | Setting up python-psutil (3.4.2-1ubuntu0.1) ...
| |
− | Setting up python-urllib3 (1.13.1-2ubuntu0.16.04.3) ...
| |
− | Setting up python-requests (2.9.1-3ubuntu0.1) ...
| |
− | Setting up irods-externals-avro1.7.7-0 (1.0~xenial) ...
| |
− | Setting up irods-externals-boost1.60.0-0 (1.0~xenial) ...
| |
− | Setting up irods-externals-clang-runtime3.8-0 (1.0~xenial) ...
| |
− | Setting up irods-externals-jansson2.7-0 (1.0~xenial) ...
| |
− | Setting up irods-externals-libarchive3.3.2-0 (1.0~xenial) ...
| |
− | Setting up irods-externals-zeromq4-14.1.3-0 (1.0~xenial) ...
| |
− | Setting up irods-runtime (4.2.7) ...
| |
− | Setting up irods-icommands (4.2.7) ...
| |
− | vitlacil@host:~$
| |
− |
| |
− | == Configure the iRODS environment ==
| |
− | | |
− | NOTE: Create your own configuration file !!
| |
− |
| |
− | vitlacil@host:~$ cd /home/vitlacil/
| |
− | vitlacil@host:~$ mkdir .irods
| |
− | vitlacil@host:~$ cat /home/vitlacil/.irods/irods_environment.json
| |
− | {
| |
− | "irods_host": "irods-login.swestore.se",
| |
− | "irods_port": 2432,
| |
− | "irods_default_resource": "pdc-gpfs",
| |
− | "irods_home": "/snic.se/home/s_dejvi",
| |
− | "irods_cwd": "/snic.se/home/s_dejvi",
| |
− | "irods_user_name": "s_dejvi",
| |
− | "irods_zone_name": "snic.se",
| |
− | "irods_client_server_negotiation": "request_server_negotiation",
| |
− | "irods_client_server_policy": "CS_NEG_REFUSE",
| |
− | "irods_default_hash_scheme": "SHA256",
| |
− | "irods_encryption_algorithm": "AES-256-CBC",
| |
− | "irods_encryption_key_size": 32,
| |
− | "irods_encryption_num_hash_rounds": 16,
| |
− | "irods_encryption_salt_size": 8,
| |
− | "irods_match_hash_policy": "compatible",
| |
− | "irods_authentication_scheme" : "PAM"
| |
− | }
| |
− | | |
− | == Authenticate and test iRODS iCommands client ==
| |
− | vitlacil@host:~$ iinit
| |
− | Enter your current PAM password:
| |
− | vitlacil@host:~$ ils
| |
− | /snic.se/home/s_dejvi:
| |
− | .DS_Store
| |
− | ._.DS_Store
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− | SISO.Certificate.pdf
| |
− | project_role_descriptions.docx
| |
− | worst-day-fosdem-2014.pdf
| |
− | C- /snic.se/home/s_dejvi/0 TiddlyWiki
| |
− | C- /snic.se/home/s_dejvi/0 reading
| |
− | C- /snic.se/home/s_dejvi/EOSC
| |
− | C- /snic.se/home/s_dejvi/EUDAT
| |
− | C- /snic.se/home/s_dejvi/FAIR
| |
− | C- /snic.se/home/s_dejvi/FitSM
| |
− | .....
| |
− | vitlacil@host:~$
| |
− | | |
− | '''Back to [https://snicdocs.nsc.liu.se/wiki/Swestore-iRODS Swestore-iRODS Documentation]'''
| |