https://docs.snic.se/w/index.php?action=history&feed=atom&title=Patchwork 2026-05-14T06:03:53Z Revision history for this page on the wiki MediaWiki 1.31.10 https://docs.snic.se/w/index.php?title=Patchwork&diff=7314&oldid=prev 2020-02-28T08:03:16Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 08:03, 28 February 2020</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{project info</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{project info</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|description=Patchwork: Bioinformatic tool for allele-specific copynumber analysis of tumor samples</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|description=Patchwork: Bioinformatic tool for allele-specific copynumber analysis of tumor samples</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|fields=Bioinformatics<del class="diffchange diffchange-inline">, cancer</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|fields=Bioinformatics<ins class="diffchange diffchange-inline">; Cancer</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|financing=SNIC/SciLifeLab</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|financing=SNIC/SciLifeLab</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|active=yes</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|active=yes</div></td></tr> </table>

Torben Rasmussen (NSC) https://docs.snic.se/w/index.php?title=Patchwork&diff=5449&oldid=prev 2013-09-27T14:52:16Z

<p>Initial adding of project</p> <p><b>New page</b></p><div>{{project info<br /> |description=Patchwork: Bioinformatic tool for allele-specific copynumber analysis of tumor samples<br /> |fields=Bioinformatics, cancer<br /> |financing=SNIC/SciLifeLab<br /> |active=yes<br /> |start date=2012-06-01<br /> |end date=2013-10-01<br /> }}<br /> <br /> Patchwork is a bioinformatic tool for analyzing and visualizing allele-specific copy numbers and loss-of-heterozygosity in cancer genomes. The data input is in the format of whole-genome sequencing data which enables characterization of genomic alterations ranging in size from point mutations to entire chromosomes. High quality results are obtained even if samples have low coverage, ~4x, low tumor cell content or are aneuploid. <br /> <br /> Patchwork is available for two data types. Patchwork takes BAM files as input whereas PatchworkCG takes input from CompleteGenomics files. <br /> <br /> http://patchwork.r-forge.r-project.org/<br /> <br /> Publication: http://genomebiology.com/2013/14/3/R24/abstract<br /> <br /> == Members ==<br /> {{#ask: [[Category:Person]] [[project::{{PAGENAME}}]]<br /> |?centre<br /> |?role<br /> |?field<br /> }}</div>

Sebastian DiLorenzo (UPPMAX)