FASTA - Revision history

Joel Hedlund (NSC) at 12:28, 12 September 2011

2011-09-12T12:28:05Z

2011-09-09T18:09:27Z

2011-07-08T12:00:25Z

2011-07-07T19:36:52Z

2011-07-07T14:11:14Z

2011-07-07T14:10:59Z

2011-07-06T12:41:04Z

2011-07-06T07:48:56Z

2011-06-14T08:34:18Z

2011-02-25T15:03:32Z

@@ Line 5: / Line 5: @@
 }}
 {{PAGENAME}} is a software {{#show: {{PAGENAME}}|?description}}. Its primary use is to search databases for sequences that are similar to a given candidate sequence.
 == Computational considerations ==
@@ Line 27: / Line 24: @@
 == License ==
 {{show license}}
 == Links ==
 * [http://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml Official site]

@@ Line 3: / Line 3: @@
 |license=free
 |fields=bioinformatics
 }}
 {{PAGENAME}} is a software {{#show: {{PAGENAME}}|?description}}. Its primary use is to search databases for sequences that are similar to a given candidate sequence.

@@ Line 2: / Line 2: @@
 |description=package for aligning nucleotide or amino acid sequences
 |license=free
-|research areas=bioinformatics
+|fields=bioinformatics
 |resources=
 }}

@@ Line 25: / Line 25: @@
 == Availability ==
 {{list resources for software}}
 == Links ==
 * [http://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml Official site]

@@ Line 5: / Line 5: @@
 |resources=
 }}
-{{PAGENAME}} is a software {{#show: Category:{{PAGENAME}}|?description}}. Its primary use is to search databases for sequences that are similar to a given candidate sequence.
+{{PAGENAME}} is a software {{#show: {{PAGENAME}}|?description}}. Its primary use is to search databases for sequences that are similar to a given candidate sequence.
 == Experts ==

@@ Line 1: / Line 1: @@
-[[Category:Bioinformatics]]
+{{software info
-[[Category:Software]]
+|description=a software package for aligning nucleotide or amino acid sequences
-[http://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml FASTA] is a software package for aligning nucleotide or amino acid sequences. Its primary use is to search databases for sequences that are similar to a given candidate sequence.
+|research areas=bioinformatics
-Responsible person: [[User:Joel Hedlund (NSC)]]
+== Experts ==
 == Computational considerations ==
@@ Line 17: / Line 21: @@
 * '''Choose a system with enough RAM''' <br/> Multiprocessor systems generally have more memory than single processor systems, and the database will also require proportionally less memory, since only one copy is needed in the OS file cache regardless of the number of processors using it.
 * '''Partition the search space''' <br/> For huge databases or very restricted amounts available memory it may be required to split the database into manageable chunks and process them as separate jobs.
 == Links ==
 * [http://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml Official site]

← Older revision		Revision as of 08:34, 14 June 2011
Line 1:		Line 1:
	[[Category:Bioinformatics]]		[[Category:Bioinformatics]]
		+	[[Category:Software]]
	[http://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml FASTA] is a software package for aligning nucleotide or amino acid sequences. Its primary use is to search databases for sequences that are similar to a given candidate sequence.		[http://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml FASTA] is a software package for aligning nucleotide or amino acid sequences. Its primary use is to search databases for sequences that are similar to a given candidate sequence.

← Older revision		Revision as of 15:03, 25 February 2011
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	* '''Choose a system with enough RAM''' <br/> Multiprocessor systems generally have more memory than single processor systems, and the database will also require proportionally less memory, since only one copy is needed in the OS file cache regardless of the number of processors using it.		* '''Choose a system with enough RAM''' <br/> Multiprocessor systems generally have more memory than single processor systems, and the database will also require proportionally less memory, since only one copy is needed in the OS file cache regardless of the number of processors using it.
	* '''Partition the search space''' <br/> For huge databases or very restricted amounts available memory it may be required to split the database into manageable chunks and process them as separate jobs.		* '''Partition the search space''' <br/> For huge databases or very restricted amounts available memory it may be required to split the database into manageable chunks and process them as separate jobs.
		+
		+	== Links ==
		+	* [http://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml Official site]