Building and testing WRF on Triolith - Revision history

Hamish Struthers (NSC) at 12:03, 31 August 2017

2017-08-31T12:03:55Z

Hamish Struthers (NSC) at 12:03, 31 August 2017

2017-08-31T12:03:22Z

Hamish Struthers (NSC) at 10:59, 24 November 2016

2016-11-24T10:59:14Z

Hamish Struthers (NSC) at 10:58, 24 November 2016

2016-11-24T10:58:37Z

Hamish Struthers (NSC): Created page with "This page describes the compiling and testing of the [http://www.wrf-model.org/index.php WRF] v371 model on NSC's triolith system ([http://www.nsc.liu.se/systems/triolith/ Trioli..."

2016-11-03T12:58:51Z

Created page with "This page describes the compiling and testing of the [http://www.wrf-model.org/index.php WRF] v371 model on NSC's triolith system ([http://www.nsc.liu.se/systems/triolith/ Trioli..."

New page

This page describes the compiling and testing of the [http://www.wrf-model.org/index.php WRF] v371 model on NSC's triolith system ([http://www.nsc.liu.se/systems/triolith/ Triolith]). Source code can be downloaded from the WRF page ([http://www2.mmm.ucar.edu/wrf/users/download/get_source.html]) after filling in a registration form.

The notes below refer to compiling and testing version 3.7.1 of the model.

1. Ensure the correct intel compiler, HDF5 and netcdf modules are loaded using:

:<code>module load buildenv-intel/2015-1</code>
:<code>module load hdf5/1.8.14-i1403-impi-5.0.2.044</code>
:<code>module load netcdf/4.3.2-i1403-impi-5.0.2.044-hdf5-1.8.14</code>

2. Set appropriate HDF5 and netcdf environmeot variables:

:<code>export PHDF5=/software/apps/hdf5/1.8.14/i1403-impi-5.0.2.044</code>
:<code>export NETCDF=/software/apps/netcdf/4.3.2/i1403-impi-5.0.2.044-hdf5-1.8.14</code>

3. Configure the model. In the WRF base folder (WRF3):

:<code>./configure</code>

If you are using/testing the 3D version of the model, choose option 16

If you are using/testing the 2D version of the model, choose option 13 (serial). For the 2D case, at this point the <code>configure.wrf</code> file also needs to be edited - lines 241-244 should appear as:

:<code>
LIB_EXTERNAL = \
-L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/software/apps/netcdf/4.3.2/i1403-impi-5.0.2.044-hdf5-1.8.14/lib -lnetcdff -lnetcdf \
-L/software/apps/intel/composer_xe_2015.1.133/compiler/lib/intel64 -liomp5
</code>

4. Compile the model:

:<code>./compile -j 4 wrf</code>

5. Compile test case (see README_test_cases), e.g. 3D quarter-circle sheer supercell

:<code>./compile em_quarter_ss</code>

6. After a successful build, go to the specific test directory, e.g.:

:<code>cd test/em_quarter_ss</code>

and run the initialization (<code>ideal.exe</code>) followed by the simulation (<code>wrf.exe</code>).

* 3D case

The model should be launched using NSC's [https://www.nsc.liu.se/systems/triolith/software/triolith-software-apps-mpprun.html mpprun] MPI launch application. The model can be tested using an interactive session e.g.

:<code>interactive -N 1 -A <your-SNCI-project-code> -t 01:00:00</code>
:<code>mpprun ideal.exe</code>
:<code>mpprun wrf.exe</code>

or by submitting a run script to the batch queue system on Triolith e.g. run script:

:<code>
#!/bin/csh
#SBATCH -t 01:00:00
#SBATCH -A <your-SNCI-project-code>
#SBATCH -N 1
mpprun ideal.exe
mpprun wrf.exe
</code>

More information regarding [https://www.nsc.liu.se/support/running-applications/ running applications] on Triolith.

* 2D case

For the 2D case, the serial code can be launched directly e.g. <code>./ideal.exe</code> however note that you should still run jobs within an interactive session:

:<code>interactive -n 1 -A <your-SNCI-project-code> -t 01:00:00</code>
:<code>./ideal.exe</code>
:<code>./wrf.exe</code>

or through Triolith's batch system.

← Older revision		Revision as of 10:59, 24 November 2016
Line 74:		Line 74:


−	;Building ~~and running~~ WPS	+	;Building WPS

	1. Ensure the correct intel compiler, HDF5 and netcdf modules are loaded:		1. Ensure the correct intel compiler, HDF5 and netcdf modules are loaded:

@@ Line 55: / Line 55: @@
   #!/bin/csh
   #SBATCH -t 01:00:00
-  #SBATCH -A <your-SNCI-project-code>
+  #SBATCH -A <your-SNIC-project-code>
   #SBATCH -N 1
   mpprun ideal.exe
@@ Line 67: / Line 67: @@
 For the 2D case, the serial code can be launched directly e.g. <code>./ideal.exe</code> however note that you should still run jobs within an interactive session:
-:<code>interactive -n 1 -A <your-SNCI-project-code> -t 01:00:00</code>
+:<code>interactive -n 1 -A <your-SNIC-project-code> -t 01:00:00</code>
 :<code>./ideal.exe</code>
 :<code>./wrf.exe</code>

@@ Line 46: / Line 46: @@
 The model should be launched using NSC's [https://www.nsc.liu.se/systems/triolith/software/triolith-software-apps-mpprun.html mpprun] MPI launch application. The model can be tested using an interactive session e.g.
-:<code>interactive -N 1 -A <your-SNCI-project-code> -t 01:00:00</code>
+:<code>interactive -N 1 -A <your-SNIC-project-code> -t 01:00:00</code>
 :<code>mpprun ideal.exe</code>
 :<code>mpprun wrf.exe</code>

@@ Line 9: / Line 9: @@
 :<code>module load netcdf/4.3.2-i1403-impi-5.0.2.044-hdf5-1.8.14</code>
-. Set appropriate HDF5 and netcdf environmeot variables:
+. Set appropriate HDF5 and netcdf environment variables:
 :<code>export PHDF5=/software/apps/hdf5/1.8.14/i1403-impi-5.0.2.044</code>
@@ Line 72: / Line 72: @@
 or through Triolith's batch system.