SNIC Documentation - User contributions [en]

Awk workshop training material

2022-05-25T09:14:46Z

Pavlin Mitev (UPPMAX): Pavlin Mitev (UPPMAX) moved page Awk workshop training material - online to Awk workshop training material

{{online training material
|description=Awk workshop training material - online
|fields=Awk;workshop;training
}}

=== Online material for the SNIC training "Awk workshop" ===

https://pmitev.github.io/to-awk-or-not/

Awk workshop training material - online

2022-05-25T09:14:46Z

Pavlin Mitev (UPPMAX): Pavlin Mitev (UPPMAX) moved page Awk workshop training material - online to Awk workshop training material

#REDIRECT [[Awk workshop training material]]

Basic Singularity workshop material

2022-05-25T09:14:27Z

Pavlin Mitev (UPPMAX): Pavlin Mitev (UPPMAX) moved page Basic Singularity workshop material - online to Basic Singularity workshop material

{{online training material
|description=Basic Singularity workshop material - online
|fields=Singularity;workshop;training
}}

=== Online material for the SNIC training "Basic Singularity workshop" ===

https://pmitev.github.io/UPPMAX-Singularity-workshop/

Basic Singularity workshop material - online

2022-05-25T09:14:27Z

Pavlin Mitev (UPPMAX): Pavlin Mitev (UPPMAX) moved page Basic Singularity workshop material - online to Basic Singularity workshop material

#REDIRECT [[Basic Singularity workshop material]]

Basic Singularity workshop material

2022-05-25T09:14:10Z

Pavlin Mitev (UPPMAX):

Basic Singularity workshop material

2022-05-25T09:13:28Z

Pavlin Mitev (UPPMAX):

{{online training material
|description=Basic Singularity workshop material
|fields=Singularity;workshop;training
}}

=== Online material for the SNIC training "Basic Singularity workshop" ===

https://pmitev.github.io/UPPMAX-Singularity-workshop/

Basic Singularity workshop material

2022-05-25T09:12:30Z

Pavlin Mitev (UPPMAX): Created page with "{{online training material |description=Basic Singularity workshop material - online |fields=Singularity;workshop;training }} === Online material for the SNIC training "Basic..."

Awk workshop training material

2022-05-25T09:10:33Z

Pavlin Mitev (UPPMAX): Created page with "{{online training material |description=Awk workshop training material - online |fields=Awk;workshop;training }} === Online material for the SNIC training "Awk workshop" ===..."

Basic Singularity workshop (UPPMAX/HPC2N, September 28)

2022-05-25T09:02:50Z

Pavlin Mitev (UPPMAX):

{{training event info
|description=Basic Singularity workshop
|fields=Singularity
|event type=Workshop
|location=Umeå, Uppsala (hybrid)
|start date=2022-09-28
|end date=2022-09-28
}}

== Workshop overview ==
The online workshop is an introduction to the basic concepts of containerized software environment solutions within the Singularity framework https://sylabs.io/singularity/.

During the workshop you will have the opportunity to follow the interactive guide on
* how to run Singularity containers
* how to build your own
* good (and bad) practices on designing and building Singularity recipes
* build and/or host container remotely and what are the limitations

To fully benefit from the workshop, basic Linux system administration experience is highly desirable i.e. knowledge of package management and common tools for building and managing software: git, pip, conda, wget, curl …

Workshop web page and registration at: https://www.uppmax.uu.se/support/courses-and-workshops/singularity-workshop-announcement

Basic Singularity workshop (UPPMAX/HPC2N, September 28)

2022-05-25T08:05:54Z

Pavlin Mitev (UPPMAX): Created page with "{{training event info |description=Basic Singularity |fields=Singularity |event type=Workshop |location=Umeå, Uppsala (hybrid) |start date=2022-09-28 |end date=2022-09-28 }}..."

{{training event info
|description=Basic Singularity
|fields=Singularity
|event type=Workshop
|location=Umeå, Uppsala (hybrid)
|start date=2022-09-28
|end date=2022-09-28
}}

== Workshop overview ==
The online workshop is an introduction to the basic concepts of containerized software environment solutions within the Singularity framework https://sylabs.io/singularity/.

During the workshop you will have the opportunity to follow the interactive guide on
* how to run Singularity containers
* how to build your own
* good (and bad) practices on designing and building Singularity recipes
* build and/or host container remotely and what are the limitations

To fully benefit from the workshop, basic Linux system administration experience is highly desirable i.e. knowledge of package management and common tools for building and managing software: git, pip, conda, wget, curl …

Workshop web page and registration at: https://www.uppmax.uu.se/support/courses-and-workshops/singularity-workshop-announcement

Awk workshop (UPPMAX, August 2022)

2022-05-25T07:59:56Z

Pavlin Mitev (UPPMAX):

{{training event info
|description=Awk Workshop
|fields=Awk
|event type=Workshop
|location=Uppsala (hybrid)
|start date=2022-08-29
|end date=2022-08-30
}}

== Workshop overview ==
AWK is an interpreted programming language designed for text processing and typically used as a data extraction and reporting tool.

This two-days workshop aims to promote and demonstrate the flexibility of the tool, where the overhead of more sophisticated approaches and programming languages is not worth the bother.

Learn how to
* use Awk as an advanced grep command, capable of arithmetic selection rules with control over the content of the matched lines
* perform simple conversions, analysis or filter you data on the fly making it easy to plot or read in your favorite research tool
* handle and take advantage of data split over multiple file data sets
* use Awk as simple function or data generator
* perform simple sanity checks on your results

The workshop aims to promote the awk tool for use in everyday research work and urges you to find solutions yourself rather than expecting ready-made ones. Thus, the material given during the seminar will not be a complete guide or a manual. The purpose of the workshop is to give an overview of the capabilities of the awk language and to underline some of its particular strengths as well as its disadvantages.

Venue: Zoom + campus Polacksbacken, Uppsala, https://link.mazemap.com/2hAZSCdp.

For more information and registration, please visit: https://uppmax.uu.se/support-sv/courses-and-workshops/awk-workshop.

Awk workshop (UPPMAX, August 2022)

2022-05-25T07:52:55Z

Pavlin Mitev (UPPMAX): Created page with "{{training event info |description=Awk Workshop |fields=Awk |event type=Workshop |location=Uppsala (hybrid) |start date=2022-09-29 |end date=2022-09-30 }} == Workshop overvi..."

{{training event info
|description=Awk Workshop
|fields=Awk
|event type=Workshop
|location=Uppsala (hybrid)
|start date=2022-09-29
|end date=2022-09-30
}}

== Workshop overview ==
AWK is an interpreted programming language designed for text processing and typically used as a data extraction and reporting tool.

This two-days workshop aims to promote and demonstrate the flexibility of the tool, where the overhead of more sophisticated approaches and programming languages is not worth the bother.

Learn how to
* use Awk as an advanced grep command, capable of arithmetic selection rules with control over the content of the matched lines
* perform simple conversions, analysis or filter you data on the fly making it easy to plot or read in your favorite research tool
* handle and take advantage of data split over multiple file data sets
* use Awk as simple function or data generator
* perform simple sanity checks on your results

The workshop aims to promote the awk tool for use in everyday research work and urges you to find solutions yourself rather than expecting ready-made ones. Thus, the material given during the seminar will not be a complete guide or a manual. The purpose of the workshop is to give an overview of the capabilities of the awk language and to underline some of its particular strengths as well as its disadvantages.

Venue: Zoom + campus Polacksbacken, Uppsala, https://link.mazemap.com/2hAZSCdp.

For more information and registration, please visit: https://uppmax.uu.se/support-sv/courses-and-workshops/awk-workshop.

User:Pavlin Mitev (UPPMAX)

2021-06-10T12:10:53Z

Pavlin Mitev (UPPMAX):

{{application expert info
|first name=Pavlin
|last name=Mitev
|centre=UPPMAX
|fields=Computational materials science
|fte=100
|image=pavlin.jpg
|snic ae financing=100
|other ae financing=
|financing=SNIC





|start date=
|end date=
|is active=yes
}}

== Quick facts ==
* Ph.D. in Physiscs
* Working within eSSENCE since 2011.
* User of [[Gaussian]], [[CRYSTAL]], [[VASP]], [[GULP]], [[CASTEP]], [[LAMMPS]], [[Singularity]]

== Expertise ==
* [[expertise::Fortran]]
* [[expertise::Awk]]
* [[expertise::Lattice dynamics]]
* [[expertise::Containers]]

User:Pavlin Mitev (UPPMAX)

2021-06-10T12:09:23Z

Pavlin Mitev (UPPMAX):

{{application expert info
|first name=Pavlin
|last name=Mitev
|centre=UPPMAX
|fields=Computational materials science
|fte=100
|image=pavlin.jpg
|snic ae financing=100
|other ae financing=
|financing=SNIC





|start date=
|end date=
|is active=yes
}}

== Quick facts ==
* Ph.D. in Physiscs
* Working within eSSENCE since 2011.
* User of [[Gaussian]], [[CRYSTAL]], [[VASP]], [[GULP]], [[CASTEP]], [[LAMMPS]]

== Expertise ==
* [[expertise::Fortran]]
* [[expertise::Awk]]
* [[expertise::Lattice dynamics]]

Online training materials

2017-08-31T07:36:06Z

Pavlin Mitev (UPPMAX): /* CP2K = */

We provide an overview on publicly available training materials from SNIC related (e.g. SNIC centres) and external sources.

''This pages is currently under construction and more contents will be added soon.''

== Basic use of HPC systems ==

=== UNIX and LINUX ===

Texas Advanced Computing Center (TACC) has produced a clear and general set of [https://portal.tacc.utexas.edu/c/document_library/get_file?uuid=a0c33bf1-b2a4-48b4-a23d-fc8a79c887ec&groupId=13601 slides about HPC Linux].

[https://www.youtube.com/watch?v=XvDZLjaCJuw This video about Unix from 1982] is surprisingly relevant today, and can impart an understanding of the underlying philosophy behind the *NIX operating system.

=== Job schedulers ===

==== SLURM ====
[https://www.schedmd.com/ SLURM] is currently the most widely used job scheduler by the [[centres|SNIC centres]]. Unless you are using software, whose GUI is well integrated into the scheduler, having some knowledge about it is required when working at a SNIC installation. On the SLURM website you can access the [https://slurm.schedmd.com/documentation.html official SLURM documentation] an [https://slurm.schedmd.com/faq.html FAQ] and [https://slurm.schedmd.com/tutorials.html (video) tutorials].
In addition the SNIC centres provide their own documentation, also describing local customisation:

* NSC's [https://www.nsc.liu.se/support/batch-jobs/introduction/ Introduction to batch jobs]
* LUNARC's [http://lunarc-documentation.readthedocs.io/en/latest/batch_system/ batch system guide]
* UPPMAX's [http://uppmax.uu.se/support/user-guides/slurm-user-guide/ Slurm user guide]

== Programming ==
* [http://www.c3se.chalmers.se/index.php/Python_and_High_Performance_Computing_2014 Python course given by C3SE].
* SeSE course on [http://sese.nu/python-for-matlab-users-ht15/ Python for Matlab users]
* BioExcel webinars on [http://bioexcel.eu/category/webinar/ computational biomolecular research]. Topics include best practices for using the Gromacs and CPMD codes.
* CodeRefinery [http://coderefinery.org/lessons/ lessons on version control with Git, automated testing, CMake, etc.]

=== Parallel programming ===
* General [http://www.training.prace-ri.eu/nc/training_courses/index.html HPC training material] from PRACE
* General [https://portal.xsede.org/online-training HPC training material] from XSEDE
==== MPI ====
For [[MPI]] related training and documents see the [[MPI#Resources| resource section]] of our MPI page

==== OpenMP ====
For [[OpenMP]] related training materials refer to the [[OpenMP#Resources|resource section]] of the OpenMP page.

==== GPU programming ====
[https://www.olcf.ornl.gov/support/tutorials/ Online tutorials] from Oak Ridge National Laboratory

== Software ==
=== Quantum Espresso ===
* Link to the [http://www.quantum-espresso.org/tutorials/ Quantum Espresso web page for tutorials] and lectures from workshops.
=== VASP ===
* Link to 3-day [http://www.nersc.gov/users/training/events/3-day-vasp-workshop/ VASP workshop at NERSC 2016], including videos of presentations and slides.
=== WIEN2k ===
* Link to material from [http://susi.theochem.tuwien.ac.at/onlineworkshop/ WIEN2k workshop 2016 at McMasters University], with videos and presentation slides.
=== OpenFOAM ===
* Link to material from [http://www.tfd.chalmers.se/~hani/kurser/OS_CFD/#YEAR_2016 CFD course given in Chalmers].
=== CESM ===
* Link to material including practical sessions from the [http://www.cesm.ucar.edu/events/tutorials/2016/coursework.html 2016 CESM Tutorial] run by UCAR.
=== WRF ARW ===
* Link to [http://www2.mmm.ucar.edu/wrf/OnLineTutorial/ WRF ARW online tutorial] made available by UCAR.
=== CASTEP ===
* Link to [http://www.castep.org/CASTEP/OnlineTutorials Online tutorials]
=== CP2K ===
* Linkto [https://www.cp2k.org/howto HOWTOs]

=== GULP ===
* Link to [http://gulp.curtin.edu.au/gulp/help/manuals.cfm online manuals]

== Other topics ==
=== Data Management ===

The [[Data Management Seminar Online]] is a 3-hour seminar aimed at any UPPMAX or SNIC user who deals with large data volumes — many files, or large files, or both. The seminar focuses both on practical aspects and general best practices, e.g. how to use rsync to move files, where to place data, etc.

=== SNIC Science Cloud ===

The [[SNIC Science Cloud Workshop Material]] on Github takes 3-5 hours to complete, and teaches how to work with OpenStack-based Infrastructure-as-a-Service (IaaS).

Online training materials

2017-08-31T07:35:48Z

Pavlin Mitev (UPPMAX): /* Software */

We provide an overview on publicly available training materials from SNIC related (e.g. SNIC centres) and external sources.

''This pages is currently under construction and more contents will be added soon.''

== Basic use of HPC systems ==

=== UNIX and LINUX ===

Texas Advanced Computing Center (TACC) has produced a clear and general set of [https://portal.tacc.utexas.edu/c/document_library/get_file?uuid=a0c33bf1-b2a4-48b4-a23d-fc8a79c887ec&groupId=13601 slides about HPC Linux].

[https://www.youtube.com/watch?v=XvDZLjaCJuw This video about Unix from 1982] is surprisingly relevant today, and can impart an understanding of the underlying philosophy behind the *NIX operating system.

=== Job schedulers ===

==== SLURM ====
[https://www.schedmd.com/ SLURM] is currently the most widely used job scheduler by the [[centres|SNIC centres]]. Unless you are using software, whose GUI is well integrated into the scheduler, having some knowledge about it is required when working at a SNIC installation. On the SLURM website you can access the [https://slurm.schedmd.com/documentation.html official SLURM documentation] an [https://slurm.schedmd.com/faq.html FAQ] and [https://slurm.schedmd.com/tutorials.html (video) tutorials].
In addition the SNIC centres provide their own documentation, also describing local customisation:

* NSC's [https://www.nsc.liu.se/support/batch-jobs/introduction/ Introduction to batch jobs]
* LUNARC's [http://lunarc-documentation.readthedocs.io/en/latest/batch_system/ batch system guide]
* UPPMAX's [http://uppmax.uu.se/support/user-guides/slurm-user-guide/ Slurm user guide]

== Programming ==
* [http://www.c3se.chalmers.se/index.php/Python_and_High_Performance_Computing_2014 Python course given by C3SE].
* SeSE course on [http://sese.nu/python-for-matlab-users-ht15/ Python for Matlab users]
* BioExcel webinars on [http://bioexcel.eu/category/webinar/ computational biomolecular research]. Topics include best practices for using the Gromacs and CPMD codes.
* CodeRefinery [http://coderefinery.org/lessons/ lessons on version control with Git, automated testing, CMake, etc.]

=== Parallel programming ===
* General [http://www.training.prace-ri.eu/nc/training_courses/index.html HPC training material] from PRACE
* General [https://portal.xsede.org/online-training HPC training material] from XSEDE
==== MPI ====
For [[MPI]] related training and documents see the [[MPI#Resources| resource section]] of our MPI page

==== OpenMP ====
For [[OpenMP]] related training materials refer to the [[OpenMP#Resources|resource section]] of the OpenMP page.

==== GPU programming ====
[https://www.olcf.ornl.gov/support/tutorials/ Online tutorials] from Oak Ridge National Laboratory

== Software ==
=== Quantum Espresso ===
* Link to the [http://www.quantum-espresso.org/tutorials/ Quantum Espresso web page for tutorials] and lectures from workshops.
=== VASP ===
* Link to 3-day [http://www.nersc.gov/users/training/events/3-day-vasp-workshop/ VASP workshop at NERSC 2016], including videos of presentations and slides.
=== WIEN2k ===
* Link to material from [http://susi.theochem.tuwien.ac.at/onlineworkshop/ WIEN2k workshop 2016 at McMasters University], with videos and presentation slides.
=== OpenFOAM ===
* Link to material from [http://www.tfd.chalmers.se/~hani/kurser/OS_CFD/#YEAR_2016 CFD course given in Chalmers].
=== CESM ===
* Link to material including practical sessions from the [http://www.cesm.ucar.edu/events/tutorials/2016/coursework.html 2016 CESM Tutorial] run by UCAR.
=== WRF ARW ===
* Link to [http://www2.mmm.ucar.edu/wrf/OnLineTutorial/ WRF ARW online tutorial] made available by UCAR.
=== CASTEP ===
* Link to [http://www.castep.org/CASTEP/OnlineTutorials Online tutorials]
=== CP2K ====
* Linkto [https://www.cp2k.org/howto HOWTOs]
=== GULP ===
* Link to [http://gulp.curtin.edu.au/gulp/help/manuals.cfm online manuals]

== Other topics ==
=== Data Management ===

The [[Data Management Seminar Online]] is a 3-hour seminar aimed at any UPPMAX or SNIC user who deals with large data volumes — many files, or large files, or both. The seminar focuses both on practical aspects and general best practices, e.g. how to use rsync to move files, where to place data, etc.

=== SNIC Science Cloud ===

The [[SNIC Science Cloud Workshop Material]] on Github takes 3-5 hours to complete, and teaches how to work with OpenStack-based Infrastructure-as-a-Service (IaaS).

Online training materials

2017-08-31T07:32:50Z

Pavlin Mitev (UPPMAX): /* Software */

We provide an overview on publicly available training materials from SNIC related (e.g. SNIC centres) and external sources.

''This pages is currently under construction and more contents will be added soon.''

== Basic use of HPC systems ==

=== UNIX and LINUX ===

Texas Advanced Computing Center (TACC) has produced a clear and general set of [https://portal.tacc.utexas.edu/c/document_library/get_file?uuid=a0c33bf1-b2a4-48b4-a23d-fc8a79c887ec&groupId=13601 slides about HPC Linux].

[https://www.youtube.com/watch?v=XvDZLjaCJuw This video about Unix from 1982] is surprisingly relevant today, and can impart an understanding of the underlying philosophy behind the *NIX operating system.

=== Job schedulers ===

==== SLURM ====
[https://www.schedmd.com/ SLURM] is currently the most widely used job scheduler by the [[centres|SNIC centres]]. Unless you are using software, whose GUI is well integrated into the scheduler, having some knowledge about it is required when working at a SNIC installation. On the SLURM website you can access the [https://slurm.schedmd.com/documentation.html official SLURM documentation] an [https://slurm.schedmd.com/faq.html FAQ] and [https://slurm.schedmd.com/tutorials.html (video) tutorials].
In addition the SNIC centres provide their own documentation, also describing local customisation:

* NSC's [https://www.nsc.liu.se/support/batch-jobs/introduction/ Introduction to batch jobs]
* LUNARC's [http://lunarc-documentation.readthedocs.io/en/latest/batch_system/ batch system guide]
* UPPMAX's [http://uppmax.uu.se/support/user-guides/slurm-user-guide/ Slurm user guide]

== Programming ==
* [http://www.c3se.chalmers.se/index.php/Python_and_High_Performance_Computing_2014 Python course given by C3SE].
* SeSE course on [http://sese.nu/python-for-matlab-users-ht15/ Python for Matlab users]
* BioExcel webinars on [http://bioexcel.eu/category/webinar/ computational biomolecular research]. Topics include best practices for using the Gromacs and CPMD codes.
* CodeRefinery [http://coderefinery.org/lessons/ lessons on version control with Git, automated testing, CMake, etc.]

=== Parallel programming ===
* General [http://www.training.prace-ri.eu/nc/training_courses/index.html HPC training material] from PRACE
* General [https://portal.xsede.org/online-training HPC training material] from XSEDE
==== MPI ====
For [[MPI]] related training and documents see the [[MPI#Resources| resource section]] of our MPI page

==== OpenMP ====
For [[OpenMP]] related training materials refer to the [[OpenMP#Resources|resource section]] of the OpenMP page.

==== GPU programming ====
[https://www.olcf.ornl.gov/support/tutorials/ Online tutorials] from Oak Ridge National Laboratory

== Software ==
=== Quantum Espresso ===
* Link to the [http://www.quantum-espresso.org/tutorials/ Quantum Espresso web page for tutorials] and lectures from workshops.
=== VASP ===
* Link to 3-day [http://www.nersc.gov/users/training/events/3-day-vasp-workshop/ VASP workshop at NERSC 2016], including videos of presentations and slides.
=== WIEN2k ===
* Link to material from [http://susi.theochem.tuwien.ac.at/onlineworkshop/ WIEN2k workshop 2016 at McMasters University], with videos and presentation slides.
=== OpenFOAM ===
* Link to material from [http://www.tfd.chalmers.se/~hani/kurser/OS_CFD/#YEAR_2016 CFD course given in Chalmers].
=== CESM ===
* Link to material including practical sessions from the [http://www.cesm.ucar.edu/events/tutorials/2016/coursework.html 2016 CESM Tutorial] run by UCAR.
=== WRF ARW ===
* Link to [http://www2.mmm.ucar.edu/wrf/OnLineTutorial/ WRF ARW online tutorial] made available by UCAR.
=== CASTEP ===
* Link to [http://www.castep.org/CASTEP/OnlineTutorials Online tutorials]
=== CP2K ====
* Linkto [https://www.cp2k.org/howto HOWTOs]

== Other topics ==
=== Data Management ===

The [[Data Management Seminar Online]] is a 3-hour seminar aimed at any UPPMAX or SNIC user who deals with large data volumes — many files, or large files, or both. The seminar focuses both on practical aspects and general best practices, e.g. how to use rsync to move files, where to place data, etc.

=== SNIC Science Cloud ===

The [[SNIC Science Cloud Workshop Material]] on Github takes 3-5 hours to complete, and teaches how to work with OpenStack-based Infrastructure-as-a-Service (IaaS).

Online training materials

2017-08-31T07:30:46Z

Pavlin Mitev (UPPMAX): /* Software */

We provide an overview on publicly available training materials from SNIC related (e.g. SNIC centres) and external sources.

''This pages is currently under construction and more contents will be added soon.''

== Basic use of HPC systems ==

=== UNIX and LINUX ===

Texas Advanced Computing Center (TACC) has produced a clear and general set of [https://portal.tacc.utexas.edu/c/document_library/get_file?uuid=a0c33bf1-b2a4-48b4-a23d-fc8a79c887ec&groupId=13601 slides about HPC Linux].

[https://www.youtube.com/watch?v=XvDZLjaCJuw This video about Unix from 1982] is surprisingly relevant today, and can impart an understanding of the underlying philosophy behind the *NIX operating system.

=== Job schedulers ===

==== SLURM ====
[https://www.schedmd.com/ SLURM] is currently the most widely used job scheduler by the [[centres|SNIC centres]]. Unless you are using software, whose GUI is well integrated into the scheduler, having some knowledge about it is required when working at a SNIC installation. On the SLURM website you can access the [https://slurm.schedmd.com/documentation.html official SLURM documentation] an [https://slurm.schedmd.com/faq.html FAQ] and [https://slurm.schedmd.com/tutorials.html (video) tutorials].
In addition the SNIC centres provide their own documentation, also describing local customisation:

* NSC's [https://www.nsc.liu.se/support/batch-jobs/introduction/ Introduction to batch jobs]
* LUNARC's [http://lunarc-documentation.readthedocs.io/en/latest/batch_system/ batch system guide]
* UPPMAX's [http://uppmax.uu.se/support/user-guides/slurm-user-guide/ Slurm user guide]

== Programming ==
* [http://www.c3se.chalmers.se/index.php/Python_and_High_Performance_Computing_2014 Python course given by C3SE].
* SeSE course on [http://sese.nu/python-for-matlab-users-ht15/ Python for Matlab users]
* BioExcel webinars on [http://bioexcel.eu/category/webinar/ computational biomolecular research]. Topics include best practices for using the Gromacs and CPMD codes.
* CodeRefinery [http://coderefinery.org/lessons/ lessons on version control with Git, automated testing, CMake, etc.]

=== Parallel programming ===
* General [http://www.training.prace-ri.eu/nc/training_courses/index.html HPC training material] from PRACE
* General [https://portal.xsede.org/online-training HPC training material] from XSEDE
==== MPI ====
For [[MPI]] related training and documents see the [[MPI#Resources| resource section]] of our MPI page

==== OpenMP ====
For [[OpenMP]] related training materials refer to the [[OpenMP#Resources|resource section]] of the OpenMP page.

==== GPU programming ====
[https://www.olcf.ornl.gov/support/tutorials/ Online tutorials] from Oak Ridge National Laboratory

== Software ==
=== Quantum Espresso ===
* Link to the [http://www.quantum-espresso.org/tutorials/ Quantum Espresso web page for tutorials] and lectures from workshops.
=== VASP ===
* Link to 3-day [http://www.nersc.gov/users/training/events/3-day-vasp-workshop/ VASP workshop at NERSC 2016], including videos of presentations and slides.
=== WIEN2k ===
* Link to material from [http://susi.theochem.tuwien.ac.at/onlineworkshop/ WIEN2k workshop 2016 at McMasters University], with videos and presentation slides.
=== OpenFOAM ===
* Link to material from [http://www.tfd.chalmers.se/~hani/kurser/OS_CFD/#YEAR_2016 CFD course given in Chalmers].
=== CESM ===
* Link to material including practical sessions from the [http://www.cesm.ucar.edu/events/tutorials/2016/coursework.html 2016 CESM Tutorial] run by UCAR.
=== WRF ARW ===
* Link to [http://www2.mmm.ucar.edu/wrf/OnLineTutorial/ WRF ARW online tutorial] made available by UCAR.
=== CASTEP ===
* Link to [http://www.castep.org/CASTEP/OnlineTutorials Online tutorials]

== Other topics ==
=== Data Management ===

The [[Data Management Seminar Online]] is a 3-hour seminar aimed at any UPPMAX or SNIC user who deals with large data volumes — many files, or large files, or both. The seminar focuses both on practical aspects and general best practices, e.g. how to use rsync to move files, where to place data, etc.

=== SNIC Science Cloud ===

The [[SNIC Science Cloud Workshop Material]] on Github takes 3-5 hours to complete, and teaches how to work with OpenStack-based Infrastructure-as-a-Service (IaaS).

User:Pavlin Mitev (UPPMAX)

2013-09-12T08:42:09Z

Pavlin Mitev (UPPMAX):

{{application expert info
|first name=Pavlin
|last name=Mitev
|centre=UPPMAX
|fields=Computational materials science
|fte=45
|image=pavlin.jpg
|snic ae financing=45
|other ae financing=
|financing=SNIC





}}

== Quick facts ==
* Ph.D. in Physiscs
* Working within eSSENCE since 2011.
* User of [[Gaussian]], [[CRYSTAL]], [[VASP]], [[GULP]], [[CASTEP]], [[LAMMPS]]

== Expertise ==
* [[expertise::Fortran]]
* [[expertise::Awk]]
* [[expertise::Lattice dynamics]]

User:Pavlin Mitev (UPPMAX)

2013-09-12T08:41:15Z

Pavlin Mitev (UPPMAX):

{{application expert info
|first name=Pavlin
|last name=Mitev
|centre=UPPMAX
|fields=Computational materials science
|fte=50
|image=pavlin.jpg
|snic ae financing=45
|other ae financing=
|financing=SNIC





}}

== Quick facts ==
* Ph.D. in Physiscs
* Working within eSSENCE since 2011.
* User of [[Gaussian]], [[CRYSTAL]], [[VASP]], [[GULP]], [[CASTEP]], [[LAMMPS]]

== Expertise ==
* [[expertise::Fortran]]
* [[expertise::Awk]]
* [[expertise::Lattice dynamics]]

User:Pavlin Mitev (UPPMAX)

2012-03-15T08:48:57Z

Pavlin Mitev (UPPMAX):

{{application expert info
|first name=Pavlin
|last name=Mitev
|centre=UPPMAX
|fields=Computational materials science
|fte=50
|image=pavlin.jpg
|snic ae financing=50
|other ae financing=
|financing=SNIC





}}

== Quick facts ==
* Ph.D. in Physiscs
* Working within eSSENCE since 2011.
* User of [[Gaussian]], [[CRYSTAL]], [[VASP]], [[GULP]], [[CASTEP]], [[LAMMPS]]

== Expertise ==
* [[expertise::Fortran]]
* [[expertise::Awk]]
* [[expertise::Lattice dynamics]]

File:Pavlin.jpg

2012-03-15T08:47:14Z

Pavlin Mitev (UPPMAX):