http://docs.snic.se/w/api.php?action=feedcontributions&user=Jonathan+Vincent+%28PDC%29&feedformat=atomSNIC Documentation - User contributions [en]2024-03-28T15:28:19ZUser contributionsMediaWiki 1.31.10http://docs.snic.se/w/index.php?title=RSPt&diff=6245RSPt2016-04-21T06:59:56Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{software info<br />
|description=all-electron full-potential linearised muffin-tin orbital (FP-LMTO) code with many features. Dynamic mean field capabilities is included in the code.<br />
|license=free<br />
|fields=Computational materials science<br />
}}<br />
[http://fplmto-rspt.org {{PAGENAME}}] is an {{#show: {{PAGENAME}} |?description}}. <br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
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<!-- == Tips and tricks == --><br />
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== License ==<br />
{{show license}}<br />
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== Experts ==<br />
{{list experts}}<br />
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== Links ==<br />
* [http://fplmto-rspt.org Main web page]. The official website. All information about {{PAGENAME}} can be found here.</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=RSPt&diff=6244RSPt2016-04-21T06:59:38Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{software info<br />
|description=all-electron full-potential linearised muffin-tin orbital (FP-LMTO) code with many features. Dynamic mean field capabilities is included in the code.<br />
|license=free<br />
|fields=Computational materials science<br />
}}<br />
[http://www.fplmto-rspt.org {{PAGENAME}}] is an {{#show: {{PAGENAME}} |?description}}. <br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
<!-- == Tips and tricks == --><br />
<br />
== License ==<br />
{{show license}}<br />
<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== Links ==<br />
* [http://fplmto-rspt.org Main web page]. The official website. All information about {{PAGENAME}} can be found here.</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Allinea_Performance_and_Debugging_Tools_Workshop_(PDC_January_2016)&diff=6197Allinea Performance and Debugging Tools Workshop (PDC January 2016)2015-12-18T11:19:47Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{training event info<br />
|description=Allinea Performance and Debugging Tools Workshop<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2016-01-25<br />
|end date=2016-01-25<br />
}}<br />
== Seminar overview ==<br />
Please join HPC software specialists 'Allinea' for a half-day technical workshop at PDC on using Allinea tools to improve the efficiency of the development process for your MPI, OpenMP or hybrid applications.<br />
<br />
Participants will be given access to the local cluster at PDC and Allinea tools. This is a real hands-on opportunity to learn from an Allinea expert who will share best practises on how to debug, profile and analyse the performance of your parallel applications written in C/C++ or Fortran.<br />
<br />
Using Allinea tools you will be able to progress the development of your MPI, OpenMP or hybrid application much more efficiently as these tools are both powerful and extremely easy to navigate. The workshop will cover the following Allinea tools.<br />
<br />
*Allinea Performance Reports let you see the performance of ISV applications and your own applications within a single HTML report without instrumenting or recompiling code. This tool is now available on all SNIC sites.<br />
*Allinea Forge is a GUI-based development solution that includes:<br />
**Allinea DDT - which consigns memory leaks to history, and lets you identify and fix bugs fast by using the most advanced parallel debugger available to the HPC market (now available on all SNIC sites) and<br />
**Allinea MAP - a non-intrusive tool with less than 5% overhead that makes it possible for you to quickly profile and remove application performance bottlenecks in computation, communication, synchronisation or I/O.<br />
<br />
== Trainer ==<br />
The course is delivered by Allinea staff<br />
<br />
== Seminar web page and registration ==<br />
<br />
For registration visit: https://www.pdc.kth.se/events/event-repository/allinea-performance-and-debugging-tools-workshop</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Allinea_Performance_and_Debugging_Tools_Workshop_(PDC_January_2016)&diff=6185Allinea Performance and Debugging Tools Workshop (PDC January 2016)2015-11-06T17:54:35Z<p>Jonathan Vincent (PDC): Created page with "{{training event info |description=Allinea Performance and Debugging Tools Workshop |fields=Scientific computing |event type=Course |location=Stockholm |start date=2016-01-26 |en..."</p>
<hr />
<div>{{training event info<br />
|description=Allinea Performance and Debugging Tools Workshop<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2016-01-26<br />
|end date=2016-01-26<br />
}}<br />
== Seminar overview ==<br />
Please join HPC software specialists 'Allinea' for a half-day technical workshop at PDC on using Allinea tools to improve the efficiency of the development process for your MPI, OpenMP or hybrid applications.<br />
<br />
Participants will be given access to the local cluster at PDC and Allinea tools. This is a real hands-on opportunity to learn from an Allinea expert who will share best practises on how to debug, profile and analyse the performance of your parallel applications written in C/C++ or Fortran.<br />
<br />
Using Allinea tools you will be able to progress the development of your MPI, OpenMP or hybrid application much more efficiently as these tools are both powerful and extremely easy to navigate. The workshop will cover the following Allinea tools.<br />
<br />
*Allinea Performance Reports let you see the performance of ISV applications and your own applications within a single HTML report without instrumenting or recompiling code. This tool is now available on all SNIC sites.<br />
*Allinea Forge is a GUI-based development solution that includes:<br />
**Allinea DDT - which consigns memory leaks to history, and lets you identify and fix bugs fast by using the most advanced parallel debugger available to the HPC market (now available on all SNIC sites) and<br />
**Allinea MAP - a non-intrusive tool with less than 5% overhead that makes it possible for you to quickly profile and remove application performance bottlenecks in computation, communication, synchronisation or I/O.<br />
<br />
== Trainer ==<br />
The course is delivered by Allinea staff<br />
<br />
== Seminar web page and registration ==<br />
<br />
For registration visit: https://www.pdc.kth.se/events/event-repository/allinea-performance-and-debugging-tools-workshop</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=MPI_(PDC_December_2015)&diff=6145MPI (PDC December 2015)2015-08-28T12:10:55Z<p>Jonathan Vincent (PDC): /* Seminar web page and registration */</p>
<hr />
<div>{{training event info<br />
|description=Writing parallel applications using MPI<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2015-12-8<br />
|end date=2015-12-10<br />
}}<br />
== Seminar overview ==<br />
Introduction on how to write parallel programs using MPI<br />
<br />
== Trainer ==<br />
The course is delivered by Erwin Laure and PDC staff<br />
<br />
== Seminar web page and registration ==<br />
<br />
For registration visit: https://www.pdc.kth.se/events/event-repository/writing-parallel-applications-using-mpi-2015</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=MPI_(PDC_December_2015)&diff=6144MPI (PDC December 2015)2015-08-28T12:08:41Z<p>Jonathan Vincent (PDC): Created page with "{{training event info |description=Writing parallel applications using MPI |fields=Scientific computing |event type=Course |location=Stockholm |start date=2015-12-8 |end date=201..."</p>
<hr />
<div>{{training event info<br />
|description=Writing parallel applications using MPI<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2015-12-8<br />
|end date=2015-12-10<br />
}}<br />
== Seminar overview ==<br />
Introduction on how to write parallel programs using MPI<br />
<br />
== Trainer ==<br />
The course is delivered by Erwin Laure and PDC staff<br />
<br />
== Seminar web page and registration ==<br />
<br />
For registration visit: https://www.pdc.kth.se/events/event-repository/writing-parallel-applications-using-mpi</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Training&diff=6064Training2015-03-26T14:41:08Z<p>Jonathan Vincent (PDC): /* Training offered by other providers */</p>
<hr />
<div>This page provides an overview on high performance computed related training available to users and personnel of the [[SNIC]].<br />
<br />
== Training events offered or supported by SNIC ==<br />
{{#ask: [[Category:Training event]] [[end date::>{{CURRENTYEAR}}-{{CURRENTMONTH}}-{{CURRENTDAY}}]]<br />
|?start date<br />
|?end date<br />
|?event type<br />
|?location<br />
|?description<br />
|sort=start date<br />
}}<br />
An overview on training events offered in the past is available from the [[past training events|past training events page]].<br />
<br />
== Training offered by other providers ==<br />
* [http://sese.nu/ SeSE] provides courses in the field of e-Science for PhD-students within the Swedish academia.<br />
* [http://www.pdc.kth.se PDC] and [http://sese.nu/ SeSE] have an [http://agenda.albanova.se/conferenceDisplay.py?confId=5012 annual summerschool] at the end of August.<br />
* The [http://www.training.prace-ri.eu/ Prace training portal] provides an overview on the training offers available from [[PRACE]]. These include course, tutorials and slide sets from past events.<br />
* HLRS in Germany, in cooperation with other German HPC centres overs an extensive HPC training program. See the [http://www.hlrs.de/organization/sos/par/services/training/2015/all HLRS website] for the 2015 program. Some courses are offered in English while others use German as the teaching language.<br />
<br />
== Community specific training ==<br />
* The [http://www.scilifelab.se/ Science for Life Laboratory] (SciLifeLab) provides [http://www.scilifelab.se/education/courses/ training courses] focused on molecular biosciences.<br />
<br />
== Links ==<br />
* [[SNIC coordinated training]] project page.</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Introduction_to_GPU_programming_with_CUDA_(PDC,_May_2015)&diff=6063Introduction to GPU programming with CUDA (PDC, May 2015)2015-03-26T14:38:02Z<p>Jonathan Vincent (PDC): Created page with "{{training event info |description=ntroduction to GPU programming with CUDA |fields=GPU |event type=Course |location=PDC |start date=2015-05-21 |end date=2015-05-22 }} == Course..."</p>
<hr />
<div>{{training event info<br />
|description=ntroduction to GPU programming with CUDA<br />
|fields=GPU<br />
|event type=Course<br />
|location=PDC<br />
|start date=2015-05-21<br />
|end date=2015-05-22<br />
}}<br />
<br />
== Course overview ==<br />
General-purpose graphics processing units (GPU) can provide a<br />
significant part of the computational power used in scientific<br />
computing applications. Mastering parallel computing with these<br />
devices is therefore becoming increasingly<br />
important.<br />
<br />
The course will present an overview of the GPGPU hardware and examine<br />
the CUDA programming model and libraries in detail<br />
<br />
== Pre-requisites ==<br />
Participants should be able to program in either of C, or Fortran at an intermediate level.<br />
<br />
Participants should [https://www.pdc.kth.se/support/accounts/user apply for a PDC account].<br />
<br />
== Course web page and registration ==<br />
For more information and registration refer to the [https://www.pdc.kth.se/events/event-repository/gpu-compact-2015 PDC webpages]. Registration is now open.</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=XC-40_Architecture_(PDC_February_2015)&diff=5952XC-40 Architecture (PDC February 2015)2014-11-14T11:41:51Z<p>Jonathan Vincent (PDC): /* Trainer */</p>
<hr />
<div>{{training event info<br />
|description=Using Cray XC-40 Machines<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2015-02-03<br />
|end date=2015-02-06<br />
}}<br />
== Seminar overview ==<br />
This workshop (which runs over four days, starting and ending at lunchtime) is for people who use, or are interested in using, Cray XC supercomputers - such as Milner and Beskow at PDC. (Note that during 2014 Cray changed the name of the XC30 system to XC40 - so at PDC, Milner was delivered as an XC30 machine while Beskow is an XC40 system.) The workshop will be run by staff from Cray. You will learn how to efficiently port, optimize and execute applications on the Cray XC systems at PDC. The workshop is a mixture of lectures and practical sessions. Example exercises will be provided but attendees are strongly encouraged to bring their own applications to the workshop, as you will have the opportunity to tune your own applications during the hands-on labs with help from Cray staff.<br />
<br />
The main focus of the course is on porting and optimizing your applications on Cray systems. More specifically, the course will cover the Cray XC30 and XC40 architecture and programming environment, and give a basic overview of scientific libraries.<br />
<br />
In addition there will be a focus on identifying performance bottlenecks in scientific applications and potential causes using the Cray Performance tools CrayPat, Cray Reveal and Cray Apprentice2 for profiling and visualization.<br />
<br />
Finally there will be opportunity to learn various optimization techniques related to single CPUs and input/output, along with giving an overview of MPI3 and PGAS, as well as Coarray Fortran and Unified Parallel C.<br />
<br />
The course also includes practical work, ideally on your own code which you should bring with you. The focus of the practical work will be on porting applications to the XC-30/XC-40 platform and there will be a short introduction to debugging tools to help resolve any problems with the initial port. <br />
<br />
More information can be found on the [https://www.pdc.kth.se/events/event-repository/using-cray-xc40-and-xc30-systems-february-2015 PDC web page]<br />
<br />
== Trainer ==<br />
The course run by Cray Staff</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=XC-40_Architecture_(PDC_February_2015)&diff=5951XC-40 Architecture (PDC February 2015)2014-11-14T11:41:34Z<p>Jonathan Vincent (PDC): /* Seminar overview */</p>
<hr />
<div>{{training event info<br />
|description=Using Cray XC-40 Machines<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2015-02-03<br />
|end date=2015-02-06<br />
}}<br />
== Seminar overview ==<br />
This workshop (which runs over four days, starting and ending at lunchtime) is for people who use, or are interested in using, Cray XC supercomputers - such as Milner and Beskow at PDC. (Note that during 2014 Cray changed the name of the XC30 system to XC40 - so at PDC, Milner was delivered as an XC30 machine while Beskow is an XC40 system.) The workshop will be run by staff from Cray. You will learn how to efficiently port, optimize and execute applications on the Cray XC systems at PDC. The workshop is a mixture of lectures and practical sessions. Example exercises will be provided but attendees are strongly encouraged to bring their own applications to the workshop, as you will have the opportunity to tune your own applications during the hands-on labs with help from Cray staff.<br />
<br />
The main focus of the course is on porting and optimizing your applications on Cray systems. More specifically, the course will cover the Cray XC30 and XC40 architecture and programming environment, and give a basic overview of scientific libraries.<br />
<br />
In addition there will be a focus on identifying performance bottlenecks in scientific applications and potential causes using the Cray Performance tools CrayPat, Cray Reveal and Cray Apprentice2 for profiling and visualization.<br />
<br />
Finally there will be opportunity to learn various optimization techniques related to single CPUs and input/output, along with giving an overview of MPI3 and PGAS, as well as Coarray Fortran and Unified Parallel C.<br />
<br />
The course also includes practical work, ideally on your own code which you should bring with you. The focus of the practical work will be on porting applications to the XC-30/XC-40 platform and there will be a short introduction to debugging tools to help resolve any problems with the initial port. <br />
<br />
More information can be found on the [https://www.pdc.kth.se/events/event-repository/using-cray-xc40-and-xc30-systems-february-2015 PDC web page]<br />
<br />
== Trainer ==<br />
The course is Cray Staff</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=XC-40_Architecture_(PDC_February_2015)&diff=5950XC-40 Architecture (PDC February 2015)2014-11-14T11:41:01Z<p>Jonathan Vincent (PDC): /* Seminar overview */</p>
<hr />
<div>{{training event info<br />
|description=Using Cray XC-40 Machines<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2015-02-03<br />
|end date=2015-02-06<br />
}}<br />
== Seminar overview ==<br />
Introduction to running and optimising programs on a Cray XC-40 machine (e.g. the new cray machine Beskow at PDC)<br />
<br />
More information can be found on the [https://www.pdc.kth.se/events/event-repository/using-cray-xc40-and-xc30-systems-february-2015 PDC web page]<br />
<br />
== Trainer ==<br />
The course is Cray Staff</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=XC-40_Architecture_(PDC_February_2015)&diff=5946XC-40 Architecture (PDC February 2015)2014-10-29T12:32:32Z<p>Jonathan Vincent (PDC): Created page with "{{training event info |description=Using Cray XC-40 Machines |fields=Scientific computing |event type=Course |location=Stockholm |start date=2015-02-03 |end date=2015-02-06 }} ==..."</p>
<hr />
<div>{{training event info<br />
|description=Using Cray XC-40 Machines<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2015-02-03<br />
|end date=2015-02-06<br />
}}<br />
== Seminar overview ==<br />
Introduction to running and optimising programs on a Cray XC-40 machine (e.g. the new cray machine Beskow at PDC)<br />
<br />
== Trainer ==<br />
The course is Cray Staff</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=MPI_(PDC_November_2014)&diff=5844MPI (PDC November 2014)2014-06-05T10:32:30Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{training event info<br />
|description=Writing parallel applications using MPI<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2014-11-25<br />
|end date=2014-11-27<br />
}}<br />
== Seminar overview ==<br />
Introduction on how to write parallel programs using MPI<br />
<br />
== Trainer ==<br />
The course is delivered by Erwin Laure and PDC staff<br />
<br />
== Seminar web page and registration ==<br />
<br />
Registration is not yet open</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=MPI_(PDC_November_2014)&diff=5843MPI (PDC November 2014)2014-06-05T10:32:04Z<p>Jonathan Vincent (PDC): Created page with "{{training event info |description=Writing parallel applications using MPI |fields=Scientific computing |event type=Course |location=Stockholm |start date=2014-11-25 |end date=20..."</p>
<hr />
<div>{{training event info<br />
|description=Writing parallel applications using MPI<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2014-11-25<br />
|end date=2014-11-27<br />
}}<br />
== Seminar overview ==<br />
Introduction on how to write parallel programs by <br />
<br />
== Trainer ==<br />
The course is delivered by Erwin Laure and PDC staff<br />
<br />
== Seminar web page and registration ==<br />
<br />
Registration is not yet open</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=DDT_(PDC_September_2014)&diff=5829DDT (PDC September 2014)2014-05-14T08:29:06Z<p>Jonathan Vincent (PDC): /* Seminar web page and registration */</p>
<hr />
<div>{{training event info<br />
|description=Debugging applications using DDT<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2014-09-25<br />
|end date=2014-09-25<br />
}}<br />
== Seminar overview ==<br />
Instructions on how to use the [[DDT]] Debugger <br />
<br />
== Trainer ==<br />
The course is delivered by Allinea Staff<br />
<br />
== Seminar web page and registration ==<br />
<br />
[https://www.pdc.kth.se/events/event-repository/copy_of_ddt-training-day More information and registration form]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:Jonathan_Vincent_(PDC)&diff=5806User:Jonathan Vincent (PDC)2014-04-11T16:09:11Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{application expert info<br />
|first name=Jonathan<br />
|last name=Vincent<br />
|centre=PDC<br />
|fte=100<br />
|snic ae financing=100<br />
|other ae financing=<br />
|financing=SNIC<br />
|fields=Parallel programming<br />
|other activities=<br />
|image=Jonathan_Vincent.png<br />
|office=PDC; Teknikringen 14 ;100 44 Stockholm <br />
|phone= 08 790 6357<br />
}}<br />
<br />
== Quick facts ==<br />
* Work at PDC since 2009 <br />
* Handle advanced user support, software installations, etc. <br />
* Ph.D. 2000 in Semiconductor Physics, Postdoctoral experience in semiconductor physics and classical and quantum dynamics <br />
* Working on Benchmarking, code optimisation <br />
<br />
== Expertise ==<br />
* [[expertise::MPI]]<br />
<br />
== Projects ==<br />
* [[project::SNIC coordinated training]]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=DDT_(PDC_September_2014)&diff=5805DDT (PDC September 2014)2014-04-11T16:07:27Z<p>Jonathan Vincent (PDC): Created page with "{{training event info |description=Debugging applications using DDT |fields=Scientific computing |event type=Course |location=Stockholm |start date=2014-09-25 |end date=2014-09-2..."</p>
<hr />
<div>{{training event info<br />
|description=Debugging applications using DDT<br />
|fields=Scientific computing<br />
|event type=Course<br />
|location=Stockholm<br />
|start date=2014-09-25<br />
|end date=2014-09-25<br />
}}<br />
== Seminar overview ==<br />
Insutruction on how to use the DDT Debugger <br />
<br />
== Trainer ==<br />
The seminar is delivered by Allinea Staff<br />
<br />
== Seminar web page and registration ==<br />
Registration is not yet open</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=GENE&diff=5685GENE2014-01-22T13:40:48Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{software info<br />
|description=plasma microturbulence code<br />
|license=free<br />
|fields=Plasma Turbulence<br />
}}<br />
[http://www.ipp.mpg.de/~fsj/gene/ {{PAGENAME}}] a {{#show: {{PAGENAME}} |?description}} code which can be used to efficiently compute gyroradius-scale fluctuations and the resulting transport coefficients in magnetized fusion/astrophysical plasmas.<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
== License ==<br />
{{show license}}<br />
<br />
The {{PAGENAME}} code is distributed under its own no-cost license.<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== LINKS ==<br />
* [http://www.ipp.mpg.de/~fsj/gene/ GENE homepage]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=GENE&diff=5684GENE2014-01-22T13:39:40Z<p>Jonathan Vincent (PDC): Created page with "{{software info |description=plasma microturbulence code |license=free |fields=Plasma Turbulence }} [ http://www.ipp.mpg.de/~fsj/gene/ {{PAGENAME}}] a {{#show: {{PAGENAME}} |?des..."</p>
<hr />
<div>{{software info<br />
|description=plasma microturbulence code<br />
|license=free<br />
|fields=Plasma Turbulence<br />
}}<br />
[ http://www.ipp.mpg.de/~fsj/gene/ {{PAGENAME}}] a {{#show: {{PAGENAME}} |?description}} code which can be used to efficiently compute gyroradius-scale fluctuations and the resulting transport coefficients in magnetized fusion/astrophysical plasmas.<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
== License ==<br />
{{show license}}<br />
<br />
The {{PAGENAME}} code is distributed under LGPL.<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== LINKS ==<br />
* [http://www.ipp.mpg.de/~fsj/gene/ GENE homepage]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=5476Lindgren2013-10-24T12:53:42Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|is active=yes<br />
|start date=July 2010<br />
|end date=June 2014<br />
|resource type=compute<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, Desmond, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP, DDT, Tau<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Desmond&diff=4667Desmond2013-01-23T09:48:19Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{software info<br />
|description=molecular dynamics package<br />
|fields=Molecular dynamics; Computational chemistry<br />
|license=free<br />
}}<br />
{{PAGENAME}} is a {{#show: {{PAGENAME}} |?description}} ([http://en.wikipedia.org/wiki/Molecular_dynamics MD]).<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
== License ==<br />
{{show license}}<br />
<br />
Code is available at no cost, but requires the users to register with D.E. Shaw before it can be downloaded.<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== Links ==<br />
<br />
* [http://www.deshawresearch.com/resources_desmond.html Official website]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=4666Lindgren2013-01-23T09:45:26Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|production=yes<br />
|commissioning date=July 2010<br />
|decommissioning date=June 2014<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, Desmond, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP, DDT<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Desmond&diff=4665Desmond2013-01-23T09:45:02Z<p>Jonathan Vincent (PDC): Created page with "{{software info |description=molecular dynamics package |fields=Molecular dynamics; Computational chemistry |license=free }} {{PAGENAME}} is a {{#show: {{PAGENAME}} |?description..."</p>
<hr />
<div>{{software info<br />
|description=molecular dynamics package<br />
|fields=Molecular dynamics; Computational chemistry<br />
|license=free<br />
}}<br />
{{PAGENAME}} is a {{#show: {{PAGENAME}} |?description}} ([http://en.wikipedia.org/wiki/Molecular_dynamics MD].<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
== License ==<br />
{{show license}}<br />
<br />
Code is available at no cost, but requires the users to register with D.E. Shaw before it can be downloaded.<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== Links ==<br />
<br />
* [http://www.deshawresearch.com/resources_desmond.html Official website]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Zorn&diff=4659Zorn2013-01-19T12:51:42Z<p>Jonathan Vincent (PDC): Created page with "{{resource info |description=GPU cluster |centre=PDC |production=yes |commissioning date=February 2012 |decommissioning date=February 2015 |software=Intel compiler suite, MKL,PGI..."</p>
<hr />
<div>{{resource info<br />
|description=GPU cluster<br />
|centre=PDC<br />
|production=yes<br />
|commissioning date=February 2012<br />
|decommissioning date=February 2015<br />
|software=Intel compiler suite, MKL,PGI,DDT<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/zorn PDC guide to Zorn]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=4658Lindgren2013-01-17T09:26:09Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|production=yes<br />
|commissioning date=July 2010<br />
|decommissioning date=June 2014<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP, DDT<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=DDT&diff=4657DDT2013-01-17T09:25:37Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{software info<br />
|description=Debugger<br />
|license=Site license<br />
|fields=System tool<br />
}}<br />
[http://www.allinea.com/products/ddt/ {{PAGENAME}}] is a {{#show: {{PAGENAME}} |?description}}. It is designed for parallel computing and to scale to debug very large numbers of cores.<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
== License ==<br />
{{show license}}<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
<!--<br />
== Links ==<br />
* [http://pingu.com Official website]<br />
* [http://pingu.com Manual]<br />
--></div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=DDT&diff=4656DDT2013-01-17T09:25:17Z<p>Jonathan Vincent (PDC): Created page with "{{software info |description=Debugger |license=Site license |fields=System tool }} [http://www.allinea.com/products/ddt/ {{PAGENAME}}] is a {{#show: {{PAGENAME}} |?description}}...."</p>
<hr />
<div>{{software info<br />
|description=Debugger<br />
|license=Site license<br />
|fields=System tool<br />
}}<br />
[http://www.allinea.com/products/ddt/ {{PAGENAME}}] is a {{#show: {{PAGENAME}} |?description}}. It is designed for parallel computing and to scale to debug very large numbers of cores.<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
== License ==<br />
{{show license}}<br />
<br />
<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
<!--<br />
== Links ==<br />
* [http://pingu.com Official website]<br />
* [http://pingu.com Manual]<br />
--></div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=MKL&diff=4655MKL2013-01-17T09:24:56Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{software info<br />
|description=efficient mathematics library<br />
|license=site license<br />
|fields=System tool<br />
}}<br />
[http://software.intel.com/en-us/articles/intel-mkl/ {{PAGENAME}}] (math kernel library) is an {{#show: {{PAGENAME}} |?description}}, which many softwares can be compiled against for increased efficiency. <br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
MKL is actually included as a component in the latest release of the [[Intel compiler suite]], and may therefore be available on further resources than indicated here. Please contact [[Support|centre support]] for details.<br />
<br />
<!--<br />
== Tips and tricks ==<br />
Describe general tips and tricks for using the software here, eg. compilation trickery, general workflow design to get better performance... <br />
--><br />
== License ==<br />
{{show license}}<br />
<br />
[[NSC]] and [[PDC]] have a site license for this software.<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== Links ==<br />
* [http://software.intel.com/en-us/articles/intel-mkl/ Official website]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:Henric_Zazzi_(PDC)&diff=4647User:Henric Zazzi (PDC)2013-01-09T13:46:06Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{application expert info<br />
|first name=Henric<br />
|last name=Zazzi<br />
|centre=PDC<br />
|fields=Bioinformatics<br />
|fte=100<br />
|financing=SNIC<br />
|general activities=Bioinformatics Application support<br />
<!-- <br />
|other activities=Semicolon separated list of things you do outside of your work as an application expert.; Like other part time duties.; Use minimal *but complete* sentences.<br />
|image=name of an uploaded image file <br />
|office=Semicolon separated lines; of visiting address; newlines<br />
are ignored; Provide this only if you want to.<br />
|phone=Semicolon separated phone numbers (with optional <br />
explanation); newlines are ignored; only add this if you want users to phone you constantly. <br />
--><br />
}}<br />
<br />
<!-- <br />
== Quick facts ==<br />
* Or any other heading. <br />
* This part is clear text and very much up to you.<br />
* Bullet lists are good <br />
* for the lazy<br />
--><br />
<br />
<!-- <br />
== Expertise ==<br />
* [[expertise::Python]]<br />
* [[expertise::mass spectrometry]]<br />
* [[expertise::flux capacitor calibration]]<br />
--></div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:Henric_Zazzi_(PDC)&diff=4646User:Henric Zazzi (PDC)2013-01-09T13:45:45Z<p>Jonathan Vincent (PDC): /* Quick facts */</p>
<hr />
<div>{{application expert info<br />
|first name=Henric<br />
|last name=Zazzi<br />
|centre=PDC<br />
|fields=Bioinformatics<br />
|fte=100<br />
|financing=SNIC<br />
|general activities=Bioinformatics Application support<br />
<!-- <br />
|other activities=Semicolon separated list of things you do outside of your work as an application expert.; Like other part time duties.; Use minimal *but complete* sentences.<br />
|image=name of an uploaded image file <br />
|office=Semicolon separated lines; of visiting address; newlines<br />
are ignored; Provide this only if you want to.<br />
|phone=Semicolon separated phone numbers (with optional <br />
explanation); newlines are ignored; only add this if you want users to phone you constantly. <br />
--><br />
}}<br />
<br />
<!-- <br />
== Quick facts ==<br />
* Or any other heading. <br />
* This part is clear text and very much up to you.<br />
* Bullet lists are good <br />
* for the lazy<br />
--><br />
<br />
== Expertise ==<br />
* [[expertise::Python]]<br />
* [[expertise::mass spectrometry]]<br />
* [[expertise::flux capacitor calibration]]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:Henric_Zazzi_(PDC)&diff=4645User:Henric Zazzi (PDC)2013-01-09T13:44:44Z<p>Jonathan Vincent (PDC): Created page with "{{application expert info |first name=Henric |last name=Zazzi |centre=PDC |fields=Bioinformatics |fte=100 |financing=SNIC |general activities=Bioinformatics Application support <..."</p>
<hr />
<div>{{application expert info<br />
|first name=Henric<br />
|last name=Zazzi<br />
|centre=PDC<br />
|fields=Bioinformatics<br />
|fte=100<br />
|financing=SNIC<br />
|general activities=Bioinformatics Application support<br />
<!-- <br />
|other activities=Semicolon separated list of things you do outside of your work as an application expert.; Like other part time duties.; Use minimal *but complete* sentences.<br />
|image=name of an uploaded image file <br />
|office=Semicolon separated lines; of visiting address; newlines<br />
are ignored; Provide this only if you want to.<br />
|phone=Semicolon separated phone numbers (with optional <br />
explanation); newlines are ignored; only add this if you want users to phone you constantly. <br />
--><br />
}}<br />
<br />
== Quick facts ==<br />
* Or any other heading. <br />
* This part is clear text and very much up to you.<br />
* Bullet lists are good <br />
* for the lazy<br />
<br />
== Expertise ==<br />
* [[expertise::Python]]<br />
* [[expertise::mass spectrometry]]<br />
* [[expertise::flux capacitor calibration]]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:Adam_Peplinski_(PDC)&diff=4392User:Adam Peplinski (PDC)2012-09-12T07:38:44Z<p>Jonathan Vincent (PDC): Created page with "{{application expert info |first name=Adam |last name=Peplinkski |centre=PDC |fields=Computational fluid dynamics |fte=100 |snic ae financing=50 <!-- |image=Jing_Gong.png --> |fi..."</p>
<hr />
<div>{{application expert info<br />
|first name=Adam<br />
|last name=Peplinkski<br />
|centre=PDC<br />
|fields=Computational fluid dynamics<br />
|fte=100<br />
|snic ae financing=50<br />
<!-- |image=Jing_Gong.png --><br />
|financing=Linne Flow Centre<br />
|office= PDC; Teknikringen 14 ;100 44 Stockholm <br />
<!-- |general activities=Application expert within SeRC.--><br />
}}</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:David_Silverstein_(PDC)&diff=4367User:David Silverstein (PDC)2012-09-09T09:27:52Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{application expert info<br />
|first name=David<br />
|last name=Silverstein<br />
|centre=PDC<br />
|fte=50<br />
|snic ae financing=100<br />
|other ae financing=<br />
|financing=SERC<br />
|fields=Neuroinformatics<br />
|other activities=<br />
<!-- |image=Jonathan_Vincent.png --><br />
|office=PDC; Teknikringen 14 ;100 44 Stockholm <br />
<!-- |phone= 08 790 6357 --><br />
}}</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:David_Silverstein_(PDC)&diff=4366User:David Silverstein (PDC)2012-09-08T09:52:22Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{application expert info<br />
|first name=David<br />
|last name=Silverstein<br />
|centre=PDC<br />
|fte=100<br />
|snic ae financing=100<br />
|other ae financing=<br />
|financing=SNIC<br />
|fields=Neuroinformatics<br />
|other activities=<br />
<!-- |image=Jonathan_Vincent.png --><br />
|office=PDC; Teknikringen 14 ;100 44 Stockholm <br />
<!-- |phone= 08 790 6357 --><br />
}}</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:David_Silverstein_(PDC)&diff=4365User:David Silverstein (PDC)2012-09-08T09:52:11Z<p>Jonathan Vincent (PDC): Created page with "{{application expert info |first name=David |last name=Silverstein |centre=PDC |fte=100 |snic ae financing=100 |other ae financing= |financing=SNIC |fields=Neuroinformatics |othe..."</p>
<hr />
<div>{{application expert info<br />
|first name=David<br />
|last name=Silverstein<br />
|centre=PDC<br />
|fte=100<br />
|snic ae financing=100<br />
|other ae financing=<br />
|financing=SNIC<br />
|fields=Neuroinformatics<br />
|other activities=Neuroinformatics<br />
<!-- |image=Jonathan_Vincent.png --><br />
|office=PDC; Teknikringen 14 ;100 44 Stockholm <br />
<!-- |phone= 08 790 6357 --><br />
}}</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Ferlin&diff=4364Ferlin2012-09-08T09:47:39Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=throughput cluster resource of 58 TFLOPS<br />
|centre=PDC<br />
|production=no<br />
|commissioning date=July 2008<br />
|decommissioning date=June 2012<br />
|software=Charmm, Comsol, Dalton, Edge, Fluent, GROMACS, Gaussian, Jaguar, Meep, NAMD, OpenFOAM, STAR-CD , Vapor<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/ferlin/intro PDC guide to Ferlin]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=3775Lindgren2012-03-15T10:00:52Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|production=yes<br />
|commissioning date=July 2010<br />
|decommissioning date=June 2014<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=3774Lindgren2012-03-15T10:00:42Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info devel<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|production=yes<br />
|commissioning date=July 2010<br />
|decommissioning date=June 2014<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Ferlin&diff=3773Ferlin2012-03-15T10:00:09Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=throughput cluster resource of 58 TFLOPS<br />
|centre=PDC<br />
|production=yes<br />
|commissioning date=July 2008<br />
|decommissioning date=June 2012<br />
|software=Charmm, Comsol, Dalton, Edge, Fluent, GROMACS, Gaussian, Jaguar, Meep, NAMD, OpenFOAM, STAR-CD , Vapor<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/ferlin/intro PDC guide to Ferlin]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Ferlin&diff=3772Ferlin2012-03-15T10:00:00Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info devel<br />
|description=throughput cluster resource of 58 TFLOPS<br />
|centre=PDC<br />
|production=yes<br />
|commissioning date=July 2008<br />
|decommissioning date=June 2012<br />
|software=Charmm, Comsol, Dalton, Edge, Fluent, GROMACS, Gaussian, Jaguar, Meep, NAMD, OpenFOAM, STAR-CD , Vapor<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/ferlin/intro PDC guide to Ferlin]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Ferlin&diff=3771Ferlin2012-03-15T09:59:48Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=throughput cluster resource of 58 TFLOPS<br />
|centre=PDC<br />
|production=yes<br />
|commissioning date=July 2008<br />
|decommissioning date=June 2012<br />
|software=Charmm, Comsol, Dalton, Edge, Fluent, GROMACS, Gaussian, Jaguar, Meep, NAMD, OpenFOAM, STAR-CD , Vapor<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/ferlin/intro PDC guide to Ferlin]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Ferlin&diff=3767Ferlin2012-03-15T09:17:52Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=throughput cluster resource of 58 TFLOPS<br />
|centre=PDC<br />
|production=yes<br />
|commissioning date=July 2008<br />
|decomissioning date=June 2012<br />
|software=Charmm, Comsol, Dalton, Edge, Fluent, GROMACS, Gaussian, Jaguar, Meep, NAMD, OpenFOAM, STAR-CD , Vapor<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/ferlin/intro PDC guide to Ferlin]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=3766Lindgren2012-03-15T08:55:11Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|production=yes<br />
|commissioning date=July 2010<br />
|decomissioning date=June 2014<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Ferlin&diff=3765Ferlin2012-03-15T08:54:03Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info<br />
|description=throughput cluster resource of 58 TFLOPS<br />
|centre=PDC<br />
|production=yes<br />
|commissioning date=July 2009<br />
|decomissioning date=June 2012<br />
|software=Charmm, Comsol, Dalton, Edge, Fluent, GROMACS, Gaussian, Jaguar, Meep, NAMD, OpenFOAM, STAR-CD , Vapor<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/ferlin/intro PDC guide to Ferlin]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Ferlin&diff=3764Ferlin2012-03-15T08:53:33Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info devel<br />
|description=throughput cluster resource of 58 TFLOPS<br />
|centre=PDC<br />
|production=yes<br />
|commissioning date=July 2009<br />
|decomissioning date=June 2012<br />
|software=Charmm, Comsol, Dalton, Edge, Fluent, GROMACS, Gaussian, Jaguar, Meep, NAMD, OpenFOAM, STAR-CD , Vapor<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/ferlin/intro PDC guide to Ferlin]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=3755Lindgren2012-03-15T08:41:09Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info devel<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|production=yes<br />
|commissioning date=July 2010<br />
|decomissioning date=June 2014<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Lindgren&diff=3753Lindgren2012-03-15T08:40:45Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{resource info devel<br />
|description=Cray XE6 capability cluster with 305 TFLOPS peak performance<br />
|commissioning date=July 2010<br />
|decomissioning date=June 2014<br />
|centre=PDC<br />
|software=Amber,CP2K,CPMD, Dalton, ESPResSo, Edge, Fire, Fluent, GPAW, GROMACS, GAMESS, Intel compiler suite, MKL, MPQC, NAMD, OpenFOAM, OpenMX, PGI, PowerFLOW, Quantum Espresso, STAR-CD, StarCCM ,VASP<br />
}}<br />
<br />
== Available software ==<br />
{{list software at resource}}<br />
<br />
== Links ==<br />
* [http://www.pdc.kth.se/resources/computers/lindgren PDC guide to Lindgren]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=Pencil&diff=3669Pencil2012-03-12T13:25:16Z<p>Jonathan Vincent (PDC): Created page with "{{software info |description=The Pencil Code is a high-order finite-difference code for compressible hydrodynamic flows with magnetic fields |license=free |fields=Computational f..."</p>
<hr />
<div>{{software info<br />
|description=The Pencil Code is a high-order finite-difference code for compressible hydrodynamic flows with magnetic fields<br />
|license=free<br />
|fields=Computational fluid dynamics<br />
}}<br />
[http://www.nordita.org/software/pencil-code/ {{PAGENAME}}] is a {{#show: {{PAGENAME}} |?description}}.<br />
<br />
== Availability ==<br />
{{list resources for software}}<br />
<br />
<!--<br />
== Tips and tricks ==<br />
Describe general tips and tricks for using the software here, eg. compilation trickery, general workflow design to get better performance... <br />
--><br />
== License ==<br />
{{show license}}<br />
<br />
== Experts ==<br />
{{list experts}}<br />
<br />
== Links ==<br />
* [http://www.nordita.org/software/pencil-code/Official website]</div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:Jing_Gong_(PDC)&diff=3264User:Jing Gong (PDC)2012-01-18T10:01:05Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{application expert info<br />
|first name=Jing<br />
|last name=Gong<br />
|centre=PDC<br />
|fields=Computational fluid dynamics<br />
|fte=100<br />
|snic ae financing=100<br />
|financing=SNIC<br />
|office= PDC; Teknikringen 14 ;100 44 Stockholm <br />
}}<br />
<br />
<!-- <br />
|general activities=Semicolon separated list of things you do as an application expert.; If you feel it is necessary.; Use minimal *but complete* sentences.<br />
|other activities=Semicolon separated list of things you do outside of your work as an application expert.; Like other part time duties.; Use minimal *but complete* sentences.<br />
|image=name of an uploaded image file <br />
<br />
<br />
== Quick facts ==<br />
* Or any other heading. <br />
* This part is clear text and very much up to you.<br />
* Bullet lists are good <br />
* for the lazy<br />
<br />
== Expertise ==<br />
* [[expertise::Python]]<br />
* [[expertise::mass spectrometry]]<br />
* [[expertise::flux capacitor calibration]] --></div>Jonathan Vincent (PDC)http://docs.snic.se/w/index.php?title=User:Jing_Gong_(PDC)&diff=3263User:Jing Gong (PDC)2012-01-18T09:54:20Z<p>Jonathan Vincent (PDC): </p>
<hr />
<div>{{application expert info<br />
|first name=Jing<br />
|last name=Gong<br />
|centre=PDC<br />
|fields=Computational fluid dynamics<br />
|fte=100<br />
|office= PDC; Teknikringen 14 ;100 44 Stockholm <br />
}}<br />
<br />
<!-- <br />
|financing=who finances the application expertise part of your position (ideally: just a single word, or as few words as possible with percentages in decreasing order) <br />
|general activities=Semicolon separated list of things you do as an application expert.; If you feel it is necessary.; Use minimal *but complete* sentences.<br />
|other activities=Semicolon separated list of things you do outside of your work as an application expert.; Like other part time duties.; Use minimal *but complete* sentences.<br />
|image=name of an uploaded image file <br />
<br />
<br />
== Quick facts ==<br />
* Or any other heading. <br />
* This part is clear text and very much up to you.<br />
* Bullet lists are good <br />
* for the lazy<br />
<br />
== Expertise ==<br />
* [[expertise::Python]]<br />
* [[expertise::mass spectrometry]]<br />
* [[expertise::flux capacitor calibration]] --></div>Jonathan Vincent (PDC)