http://docs.snic.se/w/index.php?action=history&feed=atom&title=User%3AJonas_Lindemann_%28LUNARC%29%2FSweGrid_runtime_environments 2026-04-19T00:05:34Z Revision history for this page on the wiki MediaWiki 1.31.10 http://docs.snic.se/w/index.php?title=User:Jonas_Lindemann_(LUNARC)/SweGrid_runtime_environments&diff=1846&oldid=prev 2011-07-08T14:48:29Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:48, 8 July 2011</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Grid computing]]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"> &lt;!-- </ins>[[Category:Grid computing]] <ins class="diffchange diffchange-inline">--&gt;</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>NOTE: Move to internal wiki!</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>NOTE: Move to internal wiki!</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== APPS/MATH/OCTAVE ==</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== APPS/MATH/OCTAVE ==</div></td></tr> </table>

Joel Hedlund (NSC) http://docs.snic.se/w/index.php?title=User:Jonas_Lindemann_(LUNARC)/SweGrid_runtime_environments&diff=1844&oldid=prev 2011-07-08T14:47:37Z

<p>moved <a href="/w/index.php?title=SweGrid_runtime_environments&amp;action=edit&amp;redlink=1" class="new" title="SweGrid runtime environments (page does not exist)">SweGrid runtime environments</a> to <a href="/wiki/User:Jonas_Lindemann_(LUNARC)/SweGrid_runtime_environments" title="User:Jonas Lindemann (LUNARC)/SweGrid runtime environments">User:Jonas Lindemann (LUNARC)/SweGrid runtime environments</a>: Internal documentation.</p> <table class="diff diff-contentalign-left" data-mw="interface"> <tr class="diff-title" lang="en"> <td colspan="1" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="1" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:47, 8 July 2011</td> </tr><tr><td colspan="2" class="diff-notice" lang="en"><div class="mw-diff-empty">(No difference)</div> </td></tr></table>

Joel Hedlund (NSC) http://docs.snic.se/w/index.php?title=User:Jonas_Lindemann_(LUNARC)/SweGrid_runtime_environments&diff=1756&oldid=prev 2011-07-08T13:26:15Z

<p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 13:26, 8 July 2011</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Grid]]</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Grid <ins class="diffchange diffchange-inline">computing</ins>]]</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">NOTE: Move to internal wiki!</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== APPS/MATH/OCTAVE ==</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== APPS/MATH/OCTAVE ==</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> </table>

Torben Rasmussen (NSC) http://docs.snic.se/w/index.php?title=User:Jonas_Lindemann_(LUNARC)/SweGrid_runtime_environments&diff=978&oldid=prev 2011-07-05T09:52:54Z

<p>Created page with &quot;<a href="/w/index.php?title=Category:Grid&amp;action=edit&amp;redlink=1" class="new" title="Category:Grid (page does not exist)">Category:Grid</a> == APPS/MATH/OCTAVE == === Building Octave 3.2.4 (CentOS 5.x) === Download from ftp://ftp.gnu.org/gnu/octave Required build packages: * glpk-devel * qrupdat...&quot;</p> <p><b>New page</b></p><div>[[Category:Grid]]<br /> == APPS/MATH/OCTAVE ==<br /> <br /> === Building Octave 3.2.4 (CentOS 5.x) ===<br /> <br /> Download from ftp://ftp.gnu.org/gnu/octave<br /> <br /> Required build packages:<br /> <br /> * glpk-devel<br /> * qrupdate-devel<br /> * hdf5-devel<br /> * fftw-devel<br /> * qhull-devel<br /> * curl-devel<br /> * arpack-devel<br /> * readline-devel<br /> * pcre-devel<br /> * gnuplot<br /> * suitesparse-devel<br /> * texinfo<br /> <br /> Required runtime packages:<br /> <br /> * glpk<br /> * qrupdate<br /> * hdf5<br /> * fftw<br /> * qhull<br /> * curl<br /> * arpack<br /> * readline<br /> * pcre<br /> * gnuplot<br /> * suitesparse<br /> <br /> Packages built from source:<br /> <br /> GotoBLAS2 - BLAS/LAPACK http://www.tacc.utexas.edu/tacc-projects/gotoblas2/<br /> <br /> Configuration script (conf_octave):<br /> <br /> &lt;pre&gt;#!/bin/sh<br /> <br /> INSTALLDIR=/sw/pkg/octave/3.2.4<br /> BLASLIB=/sw/pkg/gotoblas2/1.13/lib/libgoto2.a<br /> LAPACKLIB=/sw/pkg/gotoblas2/1.13/lib/libgoto2.a<br /> F77=&quot;gfortran&quot;<br /> <br /> ./configure --prefix=$INSTALLDIR --with-blas=$BLASDIR --with-lapack=$LAPACKLIB --without-curl --disable-docs&lt;/pre&gt;<br /> <br /> Build octave:<br /> <br /> &lt;pre&gt;$ ./conf_octave<br /> $ make&lt;/pre&gt;<br /> <br /> Test octave:<br /> <br /> &lt;pre&gt;$ make test&lt;/pre&gt;<br /> <br /> The imread test will fail as we haven't configured it.<br /> <br /> Install octave:<br /> <br /> &lt;pre&gt;$ su<br /> $ make install&lt;/pre&gt;<br /> <br /> === Setting up runtime environment ===<br /> <br /> The following runtime script can be used. Please replace with your own search paths:<br /> <br /> &lt;pre&gt;#!/bin/bash<br /> #<br /> # OCTAVE runtime environment script for Nordugrid ARC<br /> #<br /> # Runtime environment scripts are called (bash source)<br /> # from NorduGrid ARC with argument 0,1 or 2.<br /> # First call with argument &quot;0&quot; is made before the the batch<br /> # job submission script is written.<br /> # Second call is made with argument &quot;1&quot; just prior to execution of the<br /> # user specified executable.<br /> # Third &quot;clean-up&quot; call is made with argument &quot;2&quot; after the user<br /> # specified executable has returned.<br /> #<br /> # author: Jonas Lindemann &lt;jonas.lindemann@lunarc.lu.se&gt;<br /> #<br /> <br /> case &quot;$1&quot; in<br /> 0 )<br /> # --- Called before job script creation ---<br /> ;;<br /> <br /> 1 )<br /> <br /> # --- Called before execution of job script on node ---<br /> <br /> # Setup octave home directory<br /> export OCTAVE_HOME=/sw/pkg/octave/3.2.4<br /> <br /> # include HMMer binaries in the path<br /> export PATH=$PATH:$OCTAVE_HOME/bin<br /> ;;<br /> 2 )<br /> # --- Called after job execution on node ---<br /> ;;<br /> esac&lt;/pre&gt;<br /> <br /> copy the file under [RE-dir]/APPS/MATH/OCTAVE-3.2.4</div>

Torben Rasmussen (NSC)