Online training materials - Revision history

Weine Olovsson (NSC): /* VASP */

2020-04-06T12:24:30Z

‎VASP

2019-11-01T10:39:32Z

2019-11-01T10:34:28Z

2019-08-15T08:59:29Z

‎OpenFOAM

2019-08-15T07:27:27Z

2019-03-05T07:43:16Z

2019-02-18T13:30:22Z

2019-02-18T13:29:38Z

2019-02-05T17:12:44Z

‎Software

2019-01-25T10:35:54Z

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 * [https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html#tutorial Snakemake tutorial].
 === VASP ===
-* Link to 3-day [http://www.nersc.gov/users/training/events/3-day-vasp-workshop/ VASP workshop at NERSC 2016], including videos of presentations and slides.
+* Refer to the [https://www.vasp.at/wiki/index.php/The_VASP_Manual VASP wiki], in particular check out [https://www.vasp.at/wiki/index.php/VASP_workshop Workshops] and [https://www.vasp.at/wiki/index.php/Lectures_and_presentations Lectures], which include videos of presentations and slides.
 === WIEN2k ===
 * Link to material from [http://susi.theochem.tuwien.ac.at/onlineworkshop/ WIEN2k workshop 2016 at McMasters University], with videos and presentation slides.

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 * Linkto [https://www.cp2k.org/howto HOWTOs]
 === GATK ===
 * Link to [https://software.broadinstitute.org/gatk/documentation/topic?name=tutorials&v=3 Tutorials]
 === GROMACS ===

@@ Line 79: / Line 79: @@
 === CP2K ===
 * Linkto [https://www.cp2k.org/howto HOWTOs]
 === GROMACS ===
 * [http://www.gromacs.org/Documentation/Tutorials Tutorial section] of the GROMACS website

@@ Line 91: / Line 91: @@
 === OpenFOAM ===
 * Link to material from [http://www.tfd.chalmers.se/~hani/kurser/OS_CFD/#YEAR_2016 CFD course given in Chalmers].
 === Quantum Espresso ===
 * Link to the [https://www.quantum-espresso.org/resources/tutorials Quantum Espresso web page for tutorials and lectures] from workshops.

@@ Line 79: / Line 79: @@
 === CP2K ===
 * Linkto [https://www.cp2k.org/howto HOWTOs]
 === GROMACS ===
 * [http://www.gromacs.org/Documentation/Tutorials Tutorial section] of the GROMACS website
 * [http://www.mdtutorials.com/gmx/ GROMACS tutorials] by Justin A. Lemkul from Virginia Tech
 === HOMER ===
 * [http://homer.ucsd.edu/homer/ HOMER tutorials]
@@ Line 93: / Line 93: @@
 === Quantum Espresso ===
 * Link to the [https://www.quantum-espresso.org/resources/tutorials Quantum Espresso web page for tutorials and lectures] from workshops.
 === VASP ===
 * Link to 3-day [http://www.nersc.gov/users/training/events/3-day-vasp-workshop/ VASP workshop at NERSC 2016], including videos of presentations and slides.

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 * [http://www.gromacs.org/Documentation/Tutorials Tutorial section] of the GROMACS website
 * [http://www.mdtutorials.com/gmx/ GROMACS tutorials] by Justin A. Lemkul from Virginia Tech
 === NAMD & VMD ===
 * [http://www.ks.uiuc.edu/Training/Tutorials/ Collection of tutorials] of TCBG website. Both NAMD and VMD tutorials are presented on this link.

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 * The teaching materials on [http://swcarpentry.github.io/shell-novice/ the UNIX shell] of the [https://software-carpentry.org/ software carpentry] courses are available online.  They are suitable for self study.
-* The Aalto Scientific Computing center offers an extensive ~3 day workshop on Linux shell and shell scripting. Material is available at [http://scicomp.aalto.fi/training/linux-shell-tutorial.html]
+* The Aalto Scientific Computing center offers an extensive ~3 day workshop on Linux shell and shell scripting. Material is available on [http://scicomp.aalto.fi/training/linux-shell-tutorial.html this page]
 === Job schedulers ===

← Older revision		Revision as of 13:29, 18 February 2019
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	* The teaching materials on [http://swcarpentry.github.io/shell-novice/ the UNIX shell] of the [https://software-carpentry.org/ software carpentry] courses are available online. They are suitable for self study.		* The teaching materials on [http://swcarpentry.github.io/shell-novice/ the UNIX shell] of the [https://software-carpentry.org/ software carpentry] courses are available online. They are suitable for self study.
		+
		+	* The Aalto Scientific Computing center offers an extensive ~3 day workshop on Linux shell and shell scripting. Material is available at [http://scicomp.aalto.fi/training/linux-shell-tutorial.html]

	=== Job schedulers ===		=== Job schedulers ===

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 [https://www.olcf.ornl.gov/support/tutorials/ Online tutorials] from Oak Ridge National Laboratory
-== Software ==
+== Application Software ==
 === AMBER ===
 * [http://ambermd.org/tutorials/ AMBER tutorials]

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 }}
-We provide an overview on publicly available training materials that are available on the web.
+This page provides an overview on publicly available training materials available on the web.
 == Basic use of HPC systems ==